Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 1109 | 0.68 | 0.982363 |
Target: 5'- aAGC-CGCGCcuuauu-GCGCCGAUGAc -3' miRNA: 3'- -UUGcGCGUGuuaaaauCGCGGCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 56472 | 0.67 | 0.986597 |
Target: 5'- cACGUGCACGuuuaAUUUgcGCGUCGcUGAa -3' miRNA: 3'- uUGCGCGUGU----UAAAauCGCGGCuACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 9573 | 0.67 | 0.986597 |
Target: 5'- -uUGCGCACccgcUUUGGCGgCGAUGc -3' miRNA: 3'- uuGCGCGUGuua-AAAUCGCgGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 11148 | 0.67 | 0.986597 |
Target: 5'- --aGCGCuucaaauugacgGCGGU--UAGCGCCGAUGc -3' miRNA: 3'- uugCGCG------------UGUUAaaAUCGCGGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 60512 | 0.67 | 0.988242 |
Target: 5'- cACGUGCucaAAUUgUGGCGCUGAUuGAa -3' miRNA: 3'- uUGCGCGug-UUAAaAUCGCGGCUA-CU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 107493 | 0.67 | 0.988242 |
Target: 5'- aGGCGCGCACGuuca-GGCGCCu---- -3' miRNA: 3'- -UUGCGCGUGUuaaaaUCGCGGcuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 28067 | 0.67 | 0.988242 |
Target: 5'- cGCGUGCGCAAUUgguuGCcgGgCGAUGAc -3' miRNA: 3'- uUGCGCGUGUUAAaau-CG--CgGCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 72947 | 0.67 | 0.989151 |
Target: 5'- cAGCGCGCGCcgccaacGCGUgGGUGAc -3' miRNA: 3'- -UUGCGCGUGuuaaaauCGCGgCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 24716 | 0.67 | 0.989725 |
Target: 5'- aAACGCGCACAGU---AGCGCa----- -3' miRNA: 3'- -UUGCGCGUGUUAaaaUCGCGgcuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 54746 | 0.67 | 0.989725 |
Target: 5'- uGGCGCGCACAAc-----CGCCGAaaUGGa -3' miRNA: 3'- -UUGCGCGUGUUaaaaucGCGGCU--ACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 61542 | 0.67 | 0.989725 |
Target: 5'- cGCGCGCGCGAUUUUuuuCGuuGAg-- -3' miRNA: 3'- uUGCGCGUGUUAAAAuc-GCggCUacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 90505 | 0.67 | 0.990276 |
Target: 5'- aAGCGgGCACAAUggaccaugauuuggUUAGCGuuGgcGAg -3' miRNA: 3'- -UUGCgCGUGUUAa-------------AAUCGCggCuaCU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 64696 | 0.67 | 0.990932 |
Target: 5'- uAACGUGCGCAcg-UUGGUcaacguuGCCGGUGc -3' miRNA: 3'- -UUGCGCGUGUuaaAAUCG-------CGGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 96662 | 0.67 | 0.991058 |
Target: 5'- uGCGCGcCGCuAGUcaUAGCGCCcGUGGa -3' miRNA: 3'- uUGCGC-GUG-UUAaaAUCGCGGcUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 56099 | 0.67 | 0.991058 |
Target: 5'- cAACGCGCGguGUUcaGGCGCCa---- -3' miRNA: 3'- -UUGCGCGUguUAAaaUCGCGGcuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 46874 | 0.67 | 0.991058 |
Target: 5'- gGugGCGCGCGuggaaacGGUGUCGAUGu -3' miRNA: 3'- -UugCGCGUGUuaaaa--UCGCGGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 117190 | 0.67 | 0.991058 |
Target: 5'- uACGaCGCACAAUUUcc-CGCCGAUu- -3' miRNA: 3'- uUGC-GCGUGUUAAAaucGCGGCUAcu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 110940 | 0.67 | 0.991058 |
Target: 5'- aAGCGCGUACGcUUUUAGUucGUCGuAUGGu -3' miRNA: 3'- -UUGCGCGUGUuAAAAUCG--CGGC-UACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 128863 | 0.67 | 0.991552 |
Target: 5'- gGGCGUGCACGAcggcacguuggaauaUUUUAGCcCCGAa-- -3' miRNA: 3'- -UUGCGCGUGUU---------------AAAAUCGcGGCUacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 130950 | 0.67 | 0.991908 |
Target: 5'- cGACGCGCGCGcUUUUAuacaagcgguugacGCGcCCGAaGAc -3' miRNA: 3'- -UUGCGCGUGUuAAAAU--------------CGC-GGCUaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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