miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22914 5' -49.2 NC_005137.2 + 1109 0.68 0.982363
Target:  5'- aAGC-CGCGCcuuauu-GCGCCGAUGAc -3'
miRNA:   3'- -UUGcGCGUGuuaaaauCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 56472 0.67 0.986597
Target:  5'- cACGUGCACGuuuaAUUUgcGCGUCGcUGAa -3'
miRNA:   3'- uUGCGCGUGU----UAAAauCGCGGCuACU- -5'
22914 5' -49.2 NC_005137.2 + 9573 0.67 0.986597
Target:  5'- -uUGCGCACccgcUUUGGCGgCGAUGc -3'
miRNA:   3'- uuGCGCGUGuua-AAAUCGCgGCUACu -5'
22914 5' -49.2 NC_005137.2 + 11148 0.67 0.986597
Target:  5'- --aGCGCuucaaauugacgGCGGU--UAGCGCCGAUGc -3'
miRNA:   3'- uugCGCG------------UGUUAaaAUCGCGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 60512 0.67 0.988242
Target:  5'- cACGUGCucaAAUUgUGGCGCUGAUuGAa -3'
miRNA:   3'- uUGCGCGug-UUAAaAUCGCGGCUA-CU- -5'
22914 5' -49.2 NC_005137.2 + 107493 0.67 0.988242
Target:  5'- aGGCGCGCACGuuca-GGCGCCu---- -3'
miRNA:   3'- -UUGCGCGUGUuaaaaUCGCGGcuacu -5'
22914 5' -49.2 NC_005137.2 + 28067 0.67 0.988242
Target:  5'- cGCGUGCGCAAUUgguuGCcgGgCGAUGAc -3'
miRNA:   3'- uUGCGCGUGUUAAaau-CG--CgGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 72947 0.67 0.989151
Target:  5'- cAGCGCGCGCcgccaacGCGUgGGUGAc -3'
miRNA:   3'- -UUGCGCGUGuuaaaauCGCGgCUACU- -5'
22914 5' -49.2 NC_005137.2 + 24716 0.67 0.989725
Target:  5'- aAACGCGCACAGU---AGCGCa----- -3'
miRNA:   3'- -UUGCGCGUGUUAaaaUCGCGgcuacu -5'
22914 5' -49.2 NC_005137.2 + 54746 0.67 0.989725
Target:  5'- uGGCGCGCACAAc-----CGCCGAaaUGGa -3'
miRNA:   3'- -UUGCGCGUGUUaaaaucGCGGCU--ACU- -5'
22914 5' -49.2 NC_005137.2 + 61542 0.67 0.989725
Target:  5'- cGCGCGCGCGAUUUUuuuCGuuGAg-- -3'
miRNA:   3'- uUGCGCGUGUUAAAAuc-GCggCUacu -5'
22914 5' -49.2 NC_005137.2 + 90505 0.67 0.990276
Target:  5'- aAGCGgGCACAAUggaccaugauuuggUUAGCGuuGgcGAg -3'
miRNA:   3'- -UUGCgCGUGUUAa-------------AAUCGCggCuaCU- -5'
22914 5' -49.2 NC_005137.2 + 64696 0.67 0.990932
Target:  5'- uAACGUGCGCAcg-UUGGUcaacguuGCCGGUGc -3'
miRNA:   3'- -UUGCGCGUGUuaaAAUCG-------CGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 96662 0.67 0.991058
Target:  5'- uGCGCGcCGCuAGUcaUAGCGCCcGUGGa -3'
miRNA:   3'- uUGCGC-GUG-UUAaaAUCGCGGcUACU- -5'
22914 5' -49.2 NC_005137.2 + 56099 0.67 0.991058
Target:  5'- cAACGCGCGguGUUcaGGCGCCa---- -3'
miRNA:   3'- -UUGCGCGUguUAAaaUCGCGGcuacu -5'
22914 5' -49.2 NC_005137.2 + 46874 0.67 0.991058
Target:  5'- gGugGCGCGCGuggaaacGGUGUCGAUGu -3'
miRNA:   3'- -UugCGCGUGUuaaaa--UCGCGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 117190 0.67 0.991058
Target:  5'- uACGaCGCACAAUUUcc-CGCCGAUu- -3'
miRNA:   3'- uUGC-GCGUGUUAAAaucGCGGCUAcu -5'
22914 5' -49.2 NC_005137.2 + 110940 0.67 0.991058
Target:  5'- aAGCGCGUACGcUUUUAGUucGUCGuAUGGu -3'
miRNA:   3'- -UUGCGCGUGUuAAAAUCG--CGGC-UACU- -5'
22914 5' -49.2 NC_005137.2 + 128863 0.67 0.991552
Target:  5'- gGGCGUGCACGAcggcacguuggaauaUUUUAGCcCCGAa-- -3'
miRNA:   3'- -UUGCGCGUGUU---------------AAAAUCGcGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 130950 0.67 0.991908
Target:  5'- cGACGCGCGCGcUUUUAuacaagcgguugacGCGcCCGAaGAc -3'
miRNA:   3'- -UUGCGCGUGUuAAAAU--------------CGC-GGCUaCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.