Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 60512 | 0.67 | 0.988242 |
Target: 5'- cACGUGCucaAAUUgUGGCGCUGAUuGAa -3' miRNA: 3'- uUGCGCGug-UUAAaAUCGCGGCUA-CU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 28067 | 0.67 | 0.988242 |
Target: 5'- cGCGUGCGCAAUUgguuGCcgGgCGAUGAc -3' miRNA: 3'- uUGCGCGUGUUAAaau-CG--CgGCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 107493 | 0.67 | 0.988242 |
Target: 5'- aGGCGCGCACGuuca-GGCGCCu---- -3' miRNA: 3'- -UUGCGCGUGUuaaaaUCGCGGcuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 11148 | 0.67 | 0.986597 |
Target: 5'- --aGCGCuucaaauugacgGCGGU--UAGCGCCGAUGc -3' miRNA: 3'- uugCGCG------------UGUUAaaAUCGCGGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 9573 | 0.67 | 0.986597 |
Target: 5'- -uUGCGCACccgcUUUGGCGgCGAUGc -3' miRNA: 3'- uuGCGCGUGuua-AAAUCGCgGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 56472 | 0.67 | 0.986597 |
Target: 5'- cACGUGCACGuuuaAUUUgcGCGUCGcUGAa -3' miRNA: 3'- uUGCGCGUGU----UAAAauCGCGGCuACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 1109 | 0.68 | 0.982363 |
Target: 5'- aAGC-CGCGCcuuauu-GCGCCGAUGAc -3' miRNA: 3'- -UUGcGCGUGuuaaaauCGCGGCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 93681 | 0.68 | 0.978206 |
Target: 5'- aGAUGCGCaACAGgcccAGCGCCGGa-- -3' miRNA: 3'- -UUGCGCG-UGUUaaaaUCGCGGCUacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 38803 | 0.68 | 0.980596 |
Target: 5'- cAACGCGCGCcugcccAGCGUCGAUu- -3' miRNA: 3'- -UUGCGCGUGuuaaaaUCGCGGCUAcu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 51850 | 0.68 | 0.978206 |
Target: 5'- cGACGCGCGCAAc---GGUGCCGc--- -3' miRNA: 3'- -UUGCGCGUGUUaaaaUCGCGGCuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 100082 | 0.68 | 0.978206 |
Target: 5'- uGCGUGCGCGu------CGCCGAUGAu -3' miRNA: 3'- uUGCGCGUGUuaaaaucGCGGCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 77535 | 0.68 | 0.975334 |
Target: 5'- uGugGCGCACucGUUgcaagcgguccagUUAGCGCCGuacuuUGAc -3' miRNA: 3'- -UugCGCGUGu-UAA-------------AAUCGCGGCu----ACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 58629 | 0.69 | 0.972786 |
Target: 5'- uAACGcCGCGCAAU--UAGCcGCCGAc-- -3' miRNA: 3'- -UUGC-GCGUGUUAaaAUCG-CGGCUacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 123105 | 0.69 | 0.973078 |
Target: 5'- aAAUGCGCAauggagcuGCGCCGGUGu -3' miRNA: 3'- -UUGCGCGUguuaaaauCGCGGCUACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 124933 | 0.69 | 0.971896 |
Target: 5'- uGAUGUGCuugaucgccggguuGCGAUgaacgcGGCGCCGGUGAu -3' miRNA: 3'- -UUGCGCG--------------UGUUAaaa---UCGCGGCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 130475 | 0.69 | 0.969737 |
Target: 5'- cAACGCGCuGCGAUcggUAGCGCCuuUGc -3' miRNA: 3'- -UUGCGCG-UGUUAaa-AUCGCGGcuACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 110985 | 0.69 | 0.966452 |
Target: 5'- cAGCGCGCACGAcucUUgcGCGUCGgcGGg -3' miRNA: 3'- -UUGCGCGUGUUa--AAauCGCGGCuaCU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 2401 | 0.7 | 0.955108 |
Target: 5'- cAACGCGCGCAAUc---GCGCCaaAUGGg -3' miRNA: 3'- -UUGCGCGUGUUAaaauCGCGGc-UACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 28520 | 0.7 | 0.955108 |
Target: 5'- uGACGCGC---GUUUcGGCGuuGAUGAc -3' miRNA: 3'- -UUGCGCGuguUAAAaUCGCggCUACU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 29041 | 0.71 | 0.93092 |
Target: 5'- uAGCGUGCGCGcgUUUAGUaGCC-AUGAc -3' miRNA: 3'- -UUGCGCGUGUuaAAAUCG-CGGcUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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