miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22914 5' -49.2 NC_005137.2 + 54746 0.67 0.989725
Target:  5'- uGGCGCGCACAAc-----CGCCGAaaUGGa -3'
miRNA:   3'- -UUGCGCGUGUUaaaaucGCGGCU--ACU- -5'
22914 5' -49.2 NC_005137.2 + 56099 0.67 0.991058
Target:  5'- cAACGCGCGguGUUcaGGCGCCa---- -3'
miRNA:   3'- -UUGCGCGUguUAAaaUCGCGGcuacu -5'
22914 5' -49.2 NC_005137.2 + 56472 0.67 0.986597
Target:  5'- cACGUGCACGuuuaAUUUgcGCGUCGcUGAa -3'
miRNA:   3'- uUGCGCGUGU----UAAAauCGCGGCuACU- -5'
22914 5' -49.2 NC_005137.2 + 58629 0.69 0.972786
Target:  5'- uAACGcCGCGCAAU--UAGCcGCCGAc-- -3'
miRNA:   3'- -UUGC-GCGUGUUAaaAUCG-CGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 60512 0.67 0.988242
Target:  5'- cACGUGCucaAAUUgUGGCGCUGAUuGAa -3'
miRNA:   3'- uUGCGCGug-UUAAaAUCGCGGCUA-CU- -5'
22914 5' -49.2 NC_005137.2 + 61542 0.67 0.989725
Target:  5'- cGCGCGCGCGAUUUUuuuCGuuGAg-- -3'
miRNA:   3'- uUGCGCGUGUUAAAAuc-GCggCUacu -5'
22914 5' -49.2 NC_005137.2 + 63420 0.71 0.925261
Target:  5'- -cCGUGUugGAgUUUGGCGCCGAa-- -3'
miRNA:   3'- uuGCGCGugUUaAAAUCGCGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 64696 0.67 0.990932
Target:  5'- uAACGUGCGCAcg-UUGGUcaacguuGCCGGUGc -3'
miRNA:   3'- -UUGCGCGUGUuaaAAUCG-------CGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 72947 0.67 0.989151
Target:  5'- cAGCGCGCGCcgccaacGCGUgGGUGAc -3'
miRNA:   3'- -UUGCGCGUGuuaaaauCGCGgCUACU- -5'
22914 5' -49.2 NC_005137.2 + 77535 0.68 0.975334
Target:  5'- uGugGCGCACucGUUgcaagcgguccagUUAGCGCCGuacuuUGAc -3'
miRNA:   3'- -UugCGCGUGu-UAA-------------AAUCGCGGCu----ACU- -5'
22914 5' -49.2 NC_005137.2 + 90505 0.67 0.990276
Target:  5'- aAGCGgGCACAAUggaccaugauuuggUUAGCGuuGgcGAg -3'
miRNA:   3'- -UUGCgCGUGUUAa-------------AAUCGCggCuaCU- -5'
22914 5' -49.2 NC_005137.2 + 93681 0.68 0.978206
Target:  5'- aGAUGCGCaACAGgcccAGCGCCGGa-- -3'
miRNA:   3'- -UUGCGCG-UGUUaaaaUCGCGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 96662 0.67 0.991058
Target:  5'- uGCGCGcCGCuAGUcaUAGCGCCcGUGGa -3'
miRNA:   3'- uUGCGC-GUG-UUAaaAUCGCGGcUACU- -5'
22914 5' -49.2 NC_005137.2 + 98365 0.66 0.995822
Target:  5'- -uUGUGCGCcggUUUGGCGCCGucgcGAc -3'
miRNA:   3'- uuGCGCGUGuuaAAAUCGCGGCua--CU- -5'
22914 5' -49.2 NC_005137.2 + 100082 0.68 0.978206
Target:  5'- uGCGUGCGCGu------CGCCGAUGAu -3'
miRNA:   3'- uUGCGCGUGUuaaaaucGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 102278 0.75 0.769962
Target:  5'- gAACGUGUGgAAUggUGGCGUCGGUGAu -3'
miRNA:   3'- -UUGCGCGUgUUAaaAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 107493 0.67 0.988242
Target:  5'- aGGCGCGCACGuuca-GGCGCCu---- -3'
miRNA:   3'- -UUGCGCGUGUuaaaaUCGCGGcuacu -5'
22914 5' -49.2 NC_005137.2 + 110940 0.67 0.991058
Target:  5'- aAGCGCGUACGcUUUUAGUucGUCGuAUGGu -3'
miRNA:   3'- -UUGCGCGUGUuAAAAUCG--CGGC-UACU- -5'
22914 5' -49.2 NC_005137.2 + 110985 0.69 0.966452
Target:  5'- cAGCGCGCACGAcucUUgcGCGUCGgcGGg -3'
miRNA:   3'- -UUGCGCGUGUUa--AAauCGCGGCuaCU- -5'
22914 5' -49.2 NC_005137.2 + 117190 0.67 0.991058
Target:  5'- uACGaCGCACAAUUUcc-CGCCGAUu- -3'
miRNA:   3'- uUGC-GCGUGUUAAAaucGCGGCUAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.