Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 1109 | 0.68 | 0.982363 |
Target: 5'- aAGC-CGCGCcuuauu-GCGCCGAUGAc -3' miRNA: 3'- -UUGcGCGUGuuaaaauCGCGGCUACU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 1690 | 0.72 | 0.870216 |
Target: 5'- cAACGCGCGCAAUcUUAGUcCCGAc-- -3' miRNA: 3'- -UUGCGCGUGUUAaAAUCGcGGCUacu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 2401 | 0.7 | 0.955108 |
Target: 5'- cAACGCGCGCAAUc---GCGCCaaAUGGg -3' miRNA: 3'- -UUGCGCGUGUUAaaauCGCGGc-UACU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 2473 | 0.66 | 0.995822 |
Target: 5'- -uCGCGCGCuAUUUauGCGCCGcGUGc -3' miRNA: 3'- uuGCGCGUGuUAAAauCGCGGC-UACu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 2627 | 0.66 | 0.993314 |
Target: 5'- cACGCgGCGCAuaaaUAGCGCgCGAUaGAg -3' miRNA: 3'- uUGCG-CGUGUuaaaAUCGCG-GCUA-CU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 9573 | 0.67 | 0.986597 |
Target: 5'- -uUGCGCACccgcUUUGGCGgCGAUGc -3' miRNA: 3'- uuGCGCGUGuua-AAAUCGCgGCUACu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 11148 | 0.67 | 0.986597 |
Target: 5'- --aGCGCuucaaauugacgGCGGU--UAGCGCCGAUGc -3' miRNA: 3'- uugCGCG------------UGUUAaaAUCGCGGCUACu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 19691 | 0.66 | 0.995822 |
Target: 5'- cGGCGgGCACAgaacgccuucGUUUgccUGGCGCCGuuuccguUGAa -3' miRNA: 3'- -UUGCgCGUGU----------UAAA---AUCGCGGCu------ACU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 24716 | 0.67 | 0.989725 |
Target: 5'- aAACGCGCACAGU---AGCGCa----- -3' miRNA: 3'- -UUGCGCGUGUUAaaaUCGCGgcuacu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 28067 | 0.67 | 0.988242 |
Target: 5'- cGCGUGCGCAAUUgguuGCcgGgCGAUGAc -3' miRNA: 3'- uUGCGCGUGUUAAaau-CG--CgGCUACU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 28520 | 0.7 | 0.955108 |
Target: 5'- uGACGCGC---GUUUcGGCGuuGAUGAc -3' miRNA: 3'- -UUGCGCGuguUAAAaUCGCggCUACU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 29041 | 0.71 | 0.93092 |
Target: 5'- uAGCGUGCGCGcgUUUAGUaGCC-AUGAc -3' miRNA: 3'- -UUGCGCGUGUuaAAAUCG-CGGcUACU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 29996 | 0.72 | 0.878016 |
Target: 5'- --aGCGCGCGAcccuuUUUUAGCGCgGcgGAa -3' miRNA: 3'- uugCGCGUGUU-----AAAAUCGCGgCuaCU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 33132 | 0.73 | 0.845363 |
Target: 5'- uGCGCGCACuuggucAGCGCCgGGUGGc -3' miRNA: 3'- uUGCGCGUGuuaaaaUCGCGG-CUACU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 38803 | 0.68 | 0.980596 |
Target: 5'- cAACGCGCGCcugcccAGCGUCGAUu- -3' miRNA: 3'- -UUGCGCGUGuuaaaaUCGCGGCUAcu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 41822 | 0.79 | 0.543528 |
Target: 5'- cGGCGCGcCACGcgUuugUUAGCGCUGGUGAg -3' miRNA: 3'- -UUGCGC-GUGUuaA---AAUCGCGGCUACU- -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 44037 | 0.66 | 0.993314 |
Target: 5'- uGCGCGCACGGUUUUGccuGUGCUa---- -3' miRNA: 3'- uUGCGCGUGUUAAAAU---CGCGGcuacu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 45609 | 0.66 | 0.996462 |
Target: 5'- aAACGCGUGCGcgUgcuGCGCCGc--- -3' miRNA: 3'- -UUGCGCGUGUuaAaauCGCGGCuacu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 46874 | 0.67 | 0.991058 |
Target: 5'- gGugGCGCGCGuggaaacGGUGUCGAUGu -3' miRNA: 3'- -UugCGCGUGUuaaaa--UCGCGGCUACu -5' |
|||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 51850 | 0.68 | 0.978206 |
Target: 5'- cGACGCGCGCAAc---GGUGCCGc--- -3' miRNA: 3'- -UUGCGCGUGUUaaaaUCGCGGCuacu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home