miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22914 5' -49.2 NC_005137.2 + 56099 0.67 0.991058
Target:  5'- cAACGCGCGguGUUcaGGCGCCa---- -3'
miRNA:   3'- -UUGCGCGUguUAAaaUCGCGGcuacu -5'
22914 5' -49.2 NC_005137.2 + 38803 0.68 0.980596
Target:  5'- cAACGCGCGCcugcccAGCGUCGAUu- -3'
miRNA:   3'- -UUGCGCGUGuuaaaaUCGCGGCUAcu -5'
22914 5' -49.2 NC_005137.2 + 100082 0.68 0.978206
Target:  5'- uGCGUGCGCGu------CGCCGAUGAu -3'
miRNA:   3'- uUGCGCGUGUuaaaaucGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 129207 1.08 0.011501
Target:  5'- cAACGCGCACAAUUUUAGCGCCGAUGAa -3'
miRNA:   3'- -UUGCGCGUGUUAAAAUCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 24716 0.67 0.989725
Target:  5'- aAACGCGCACAGU---AGCGCa----- -3'
miRNA:   3'- -UUGCGCGUGUUAaaaUCGCGgcuacu -5'
22914 5' -49.2 NC_005137.2 + 45609 0.66 0.996462
Target:  5'- aAACGCGUGCGcgUgcuGCGCCGc--- -3'
miRNA:   3'- -UUGCGCGUGUuaAaauCGCGGCuacu -5'
22914 5' -49.2 NC_005137.2 + 19691 0.66 0.995822
Target:  5'- cGGCGgGCACAgaacgccuucGUUUgccUGGCGCCGuuuccguUGAa -3'
miRNA:   3'- -UUGCgCGUGU----------UAAA---AUCGCGGCu------ACU- -5'
22914 5' -49.2 NC_005137.2 + 2627 0.66 0.993314
Target:  5'- cACGCgGCGCAuaaaUAGCGCgCGAUaGAg -3'
miRNA:   3'- uUGCG-CGUGUuaaaAUCGCG-GCUA-CU- -5'
22914 5' -49.2 NC_005137.2 + 128863 0.67 0.991552
Target:  5'- gGGCGUGCACGAcggcacguuggaauaUUUUAGCcCCGAa-- -3'
miRNA:   3'- -UUGCGCGUGUU---------------AAAAUCGcGGCUacu -5'
22914 5' -49.2 NC_005137.2 + 1109 0.68 0.982363
Target:  5'- aAGC-CGCGCcuuauu-GCGCCGAUGAc -3'
miRNA:   3'- -UUGcGCGUGuuaaaauCGCGGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 11148 0.67 0.986597
Target:  5'- --aGCGCuucaaauugacgGCGGU--UAGCGCCGAUGc -3'
miRNA:   3'- uugCGCG------------UGUUAaaAUCGCGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 107493 0.67 0.988242
Target:  5'- aGGCGCGCACGuuca-GGCGCCu---- -3'
miRNA:   3'- -UUGCGCGUGUuaaaaUCGCGGcuacu -5'
22914 5' -49.2 NC_005137.2 + 96662 0.67 0.991058
Target:  5'- uGCGCGcCGCuAGUcaUAGCGCCcGUGGa -3'
miRNA:   3'- uUGCGC-GUG-UUAaaAUCGCGGcUACU- -5'
22914 5' -49.2 NC_005137.2 + 9573 0.67 0.986597
Target:  5'- -uUGCGCACccgcUUUGGCGgCGAUGc -3'
miRNA:   3'- uuGCGCGUGuua-AAAUCGCgGCUACu -5'
22914 5' -49.2 NC_005137.2 + 110940 0.67 0.991058
Target:  5'- aAGCGCGUACGcUUUUAGUucGUCGuAUGGu -3'
miRNA:   3'- -UUGCGCGUGUuAAAAUCG--CGGC-UACU- -5'
22914 5' -49.2 NC_005137.2 + 28067 0.67 0.988242
Target:  5'- cGCGUGCGCAAUUgguuGCcgGgCGAUGAc -3'
miRNA:   3'- uUGCGCGUGUUAAaau-CG--CgGCUACU- -5'
22914 5' -49.2 NC_005137.2 + 56472 0.67 0.986597
Target:  5'- cACGUGCACGuuuaAUUUgcGCGUCGcUGAa -3'
miRNA:   3'- uUGCGCGUGU----UAAAauCGCGGCuACU- -5'
22914 5' -49.2 NC_005137.2 + 51850 0.68 0.978206
Target:  5'- cGACGCGCGCAAc---GGUGCCGc--- -3'
miRNA:   3'- -UUGCGCGUGUUaaaaUCGCGGCuacu -5'
22914 5' -49.2 NC_005137.2 + 64696 0.67 0.990932
Target:  5'- uAACGUGCGCAcg-UUGGUcaacguuGCCGGUGc -3'
miRNA:   3'- -UUGCGCGUGUuaaAAUCG-------CGGCUACu -5'
22914 5' -49.2 NC_005137.2 + 72947 0.67 0.989151
Target:  5'- cAGCGCGCGCcgccaacGCGUgGGUGAc -3'
miRNA:   3'- -UUGCGCGUGuuaaaauCGCGgCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.