Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22917 | 3' | -46.3 | NC_005137.2 | + | 130482 | 0.67 | 0.999357 |
Target: 5'- -gGUCAAAcaacgcGCugCGAucGGUAGCGCc -3' miRNA: 3'- caUAGUUUaa----CGugGCUu-CCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 130304 | 0.69 | 0.997384 |
Target: 5'- aUGUCAGAgccGCgcaaaggcgcuACCGAucGCAGCGCg -3' miRNA: 3'- cAUAGUUUaa-CG-----------UGGCUucCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 130010 | 0.67 | 0.99968 |
Target: 5'- ---aCAAAcgUGgGCUGAggugaAGGCGGCGCu -3' miRNA: 3'- cauaGUUUa-ACgUGGCU-----UCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 129822 | 0.7 | 0.99397 |
Target: 5'- -aGUUAAAggugGCGgCGgcGGCAACGUg -3' miRNA: 3'- caUAGUUUaa--CGUgGCuuCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 119548 | 0.66 | 0.999807 |
Target: 5'- cGUGUCGAGUgcguuuaGCcUCGGuAGaGCGACGCa -3' miRNA: 3'- -CAUAGUUUAa------CGuGGCU-UC-CGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 117727 | 0.67 | 0.99968 |
Target: 5'- -cGUCAGcc-GCACC---GGCGGCGCa -3' miRNA: 3'- caUAGUUuaaCGUGGcuuCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 117570 | 0.67 | 0.999532 |
Target: 5'- ---gCAAAgUGCGCCGccggugcggcugacGGGCGACGUg -3' miRNA: 3'- cauaGUUUaACGUGGCu-------------UCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 117037 | 0.69 | 0.997384 |
Target: 5'- uUGUCAAGUcGCG----GGGCAGCGCa -3' miRNA: 3'- cAUAGUUUAaCGUggcuUCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 116544 | 0.66 | 0.999887 |
Target: 5'- aGUAUUugaacUGguCCGAAGaCAGCGCa -3' miRNA: 3'- -CAUAGuuua-ACguGGCUUCcGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 115225 | 0.66 | 0.999801 |
Target: 5'- uUGUUAAGUUGCGuuuuggugggaggUCGAcgaacacauGGCGACGCu -3' miRNA: 3'- cAUAGUUUAACGU-------------GGCUu--------CCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 113159 | 0.68 | 0.9992 |
Target: 5'- -aGUCAAGUUGgcauuuaGCCGucGGgGAUGCg -3' miRNA: 3'- caUAGUUUAACg------UGGCuuCCgUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 111287 | 0.68 | 0.998783 |
Target: 5'- uUGUCAAGUU-CGCCGAGuuGGUcggugAGCGCu -3' miRNA: 3'- cAUAGUUUAAcGUGGCUU--CCG-----UUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 110696 | 0.66 | 0.999887 |
Target: 5'- aGUAUCGGGUcaUGCGCgCGugcGCAACGg -3' miRNA: 3'- -CAUAGUUUA--ACGUG-GCuucCGUUGCg -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 109540 | 0.67 | 0.999594 |
Target: 5'- gGUGUCAGGcUGCAgugugaCGguGGCGACGg -3' miRNA: 3'- -CAUAGUUUaACGUg-----GCuuCCGUUGCg -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 107117 | 0.7 | 0.991739 |
Target: 5'- uUGUCAAuUUGUuccugcaGCUGAgcggacuggucAGGCAACGCg -3' miRNA: 3'- cAUAGUUuAACG-------UGGCU-----------UCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 106444 | 0.76 | 0.895352 |
Target: 5'- uUAUCAGAcauugGCGCCGuGGGGCAuCGCg -3' miRNA: 3'- cAUAGUUUaa---CGUGGC-UUCCGUuGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 102249 | 0.7 | 0.991858 |
Target: 5'- -aGUCAAugaccggUGUGCC--AGGCGACGCg -3' miRNA: 3'- caUAGUUua-----ACGUGGcuUCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 99507 | 0.71 | 0.983998 |
Target: 5'- uUGUCAAAUUGCGgCu--GGCcGCGCa -3' miRNA: 3'- cAUAGUUUAACGUgGcuuCCGuUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 98357 | 0.67 | 0.999594 |
Target: 5'- -cGUCAcgcuugUGCGCCGGuuuGGCGccguCGCg -3' miRNA: 3'- caUAGUuua---ACGUGGCUu--CCGUu---GCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 96971 | 0.72 | 0.977088 |
Target: 5'- --cUCAAAUUGCGCCaacaaguAGGCucgauGACGCa -3' miRNA: 3'- cauAGUUUAACGUGGcu-----UCCG-----UUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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