Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22917 | 3' | -46.3 | NC_005137.2 | + | 94534 | 0.66 | 0.999907 |
Target: 5'- -gGUUggGgcGCACCGAGucaaugaccaccucGGCcGCGCu -3' miRNA: 3'- caUAGuuUaaCGUGGCUU--------------CCGuUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 113159 | 0.68 | 0.9992 |
Target: 5'- -aGUCAAGUUGgcauuuaGCCGucGGgGAUGCg -3' miRNA: 3'- caUAGUUUAACg------UGGCuuCCgUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 4387 | 0.68 | 0.998195 |
Target: 5'- cGUGUCGccgaccgacgcAAUUGCACguuuUGAA-GCAGCGCg -3' miRNA: 3'- -CAUAGU-----------UUAACGUG----GCUUcCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 106444 | 0.76 | 0.895352 |
Target: 5'- uUAUCAGAcauugGCGCCGuGGGGCAuCGCg -3' miRNA: 3'- cAUAGUUUaa---CGUGGC-UUCCGUuGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 38971 | 0.66 | 0.99975 |
Target: 5'- -gAUCGcGUUGCccgugcucaaauACCGuguGGGCAGCGa -3' miRNA: 3'- caUAGUuUAACG------------UGGCu--UCCGUUGCg -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 63471 | 0.66 | 0.99975 |
Target: 5'- -cGUCugacAUUGUAgUGAGGGC-GCGCg -3' miRNA: 3'- caUAGuu--UAACGUgGCUUCCGuUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 88390 | 0.66 | 0.99975 |
Target: 5'- cUAUCAcGUUGCG----AGGCAGCGUg -3' miRNA: 3'- cAUAGUuUAACGUggcuUCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 95592 | 0.67 | 0.99971 |
Target: 5'- aUGUUAAGUUGCGucacuaguCCGGgucgcaaacaacugcAGaGCAGCGCa -3' miRNA: 3'- cAUAGUUUAACGU--------GGCU---------------UC-CGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 109540 | 0.67 | 0.999594 |
Target: 5'- gGUGUCAGGcUGCAgugugaCGguGGCGACGg -3' miRNA: 3'- -CAUAGUUUaACGUg-----GCuuCCGUUGCg -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 63885 | 0.68 | 0.99901 |
Target: 5'- -aAUCAAAacgaaaaUGCugCG--GGCAACGCa -3' miRNA: 3'- caUAGUUUa------ACGugGCuuCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 130482 | 0.67 | 0.999357 |
Target: 5'- -gGUCAAAcaacgcGCugCGAucGGUAGCGCc -3' miRNA: 3'- caUAGUUUaa----CGugGCUu-CCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 130010 | 0.67 | 0.99968 |
Target: 5'- ---aCAAAcgUGgGCUGAggugaAGGCGGCGCu -3' miRNA: 3'- cauaGUUUa-ACgUGGCU-----UCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 33121 | 0.66 | 0.999887 |
Target: 5'- -gGUCA----GCGCCGGGuGGCAgcacauuugGCGCa -3' miRNA: 3'- caUAGUuuaaCGUGGCUU-CCGU---------UGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 62382 | 0.67 | 0.999357 |
Target: 5'- ---aCAAuggUGCAgCGGAcagaucgcGGCAGCGCa -3' miRNA: 3'- cauaGUUua-ACGUgGCUU--------CCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 116544 | 0.66 | 0.999887 |
Target: 5'- aGUAUUugaacUGguCCGAAGaCAGCGCa -3' miRNA: 3'- -CAUAGuuua-ACguGGCUUCcGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 117727 | 0.67 | 0.99968 |
Target: 5'- -cGUCAGcc-GCACC---GGCGGCGCa -3' miRNA: 3'- caUAGUUuaaCGUGGcuuCCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 52620 | 0.68 | 0.9992 |
Target: 5'- --uUCAccguaaaacGGUUGCGgCGGAGGCGcuugaaacggaaGCGCg -3' miRNA: 3'- cauAGU---------UUAACGUgGCUUCCGU------------UGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 111287 | 0.68 | 0.998783 |
Target: 5'- uUGUCAAGUU-CGCCGAGuuGGUcggugAGCGCu -3' miRNA: 3'- cAUAGUUUAAcGUGGCUU--CCG-----UUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 77236 | 0.66 | 0.999851 |
Target: 5'- -cGUCAAGaaaugcccuUUGC-CCGugcgcgauuGGCAACGCu -3' miRNA: 3'- caUAGUUU---------AACGuGGCuu-------CCGUUGCG- -5' |
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22917 | 3' | -46.3 | NC_005137.2 | + | 31375 | 0.66 | 0.99975 |
Target: 5'- --uUCAAGcuggUGUGCgCGAccgcugguacaaGGGCGACGCg -3' miRNA: 3'- cauAGUUUa---ACGUG-GCU------------UCCGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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