miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22940 5' -51.7 NC_005137.2 + 131025 0.66 0.978932
Target:  5'- ---cCGCGgCGUACAAuucAgGCGCGGg- -3'
miRNA:   3'- guuuGCGCgGCAUGUU---UgCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 125138 0.71 0.844318
Target:  5'- uCGAACGUcuugacaaugcaccGCCGcugacACGAugGCGCGGUGu -3'
miRNA:   3'- -GUUUGCG--------------CGGCa----UGUUugCGUGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 118105 0.69 0.912185
Target:  5'- --cGCGUGCgGUGCAAcaagguGCGCACcGUGa -3'
miRNA:   3'- guuUGCGCGgCAUGUU------UGCGUGcCAC- -5'
22940 5' -51.7 NC_005137.2 + 118004 0.71 0.838418
Target:  5'- cCGGACGCGuCCGUGCuGGugGUugcccCGGUGg -3'
miRNA:   3'- -GUUUGCGC-GGCAUG-UUugCGu----GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 112552 0.71 0.862974
Target:  5'- -uGGCGCGCCGUGCGcgauCGCGCa--- -3'
miRNA:   3'- guUUGCGCGGCAUGUuu--GCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 110905 0.67 0.97384
Target:  5'- gGAcCGUGCCGUACAccgaucgcccGGCGCACa--- -3'
miRNA:   3'- gUUuGCGCGGCAUGU----------UUGCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 110725 0.71 0.82982
Target:  5'- uGGGCGCGCCaagacgcagGUGCGGGCGCACa--- -3'
miRNA:   3'- gUUUGCGCGG---------CAUGUUUGCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 110638 0.66 0.98325
Target:  5'- aCAAACGCGCCG-AC-GGCGUuuGGc- -3'
miRNA:   3'- -GUUUGCGCGGCaUGuUUGCGugCCac -5'
22940 5' -51.7 NC_005137.2 + 110403 0.71 0.860606
Target:  5'- aCAGACGUGgUGUuuccgcagcuggcaACGGGCGCgACGGUGa -3'
miRNA:   3'- -GUUUGCGCgGCA--------------UGUUUGCG-UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 100407 0.68 0.939801
Target:  5'- --cGCGCGcCCGUGCGuugcGGCGCcCGGa- -3'
miRNA:   3'- guuUGCGC-GGCAUGU----UUGCGuGCCac -5'
22940 5' -51.7 NC_005137.2 + 100198 0.68 0.939801
Target:  5'- uGAACGCGCCGcGCGc-CGCGuCGGa- -3'
miRNA:   3'- gUUUGCGCGGCaUGUuuGCGU-GCCac -5'
22940 5' -51.7 NC_005137.2 + 99344 0.68 0.944556
Target:  5'- -cAGCGCGUgGUACGcgucggaacAAUGCACGGc- -3'
miRNA:   3'- guUUGCGCGgCAUGU---------UUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 98567 0.67 0.97384
Target:  5'- -cAACGCGCUgGUACAucACGCACuGUu -3'
miRNA:   3'- guUUGCGCGG-CAUGUu-UGCGUGcCAc -5'
22940 5' -51.7 NC_005137.2 + 98510 0.67 0.964611
Target:  5'- cCAAAC-CGgCGcACAAGCGUgACGGUGa -3'
miRNA:   3'- -GUUUGcGCgGCaUGUUUGCG-UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 98306 0.68 0.957317
Target:  5'- --cGCGCGCCGgcUAUAAAagGCGCGGc- -3'
miRNA:   3'- guuUGCGCGGC--AUGUUUg-CGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 97467 0.67 0.970983
Target:  5'- gUAGugGCGgCGUgACGcuCGCGCaGGUGg -3'
miRNA:   3'- -GUUugCGCgGCA-UGUuuGCGUG-CCAC- -5'
22940 5' -51.7 NC_005137.2 + 96458 0.74 0.724516
Target:  5'- aCuuGCGCGCCGgcgugucgGCGAAUGCACGcGUc -3'
miRNA:   3'- -GuuUGCGCGGCa-------UGUUUGCGUGC-CAc -5'
22940 5' -51.7 NC_005137.2 + 95993 0.7 0.89047
Target:  5'- gGGACGCGCCGaccacaacaauauuuCAGACGCggacAUGGUGu -3'
miRNA:   3'- gUUUGCGCGGCau-------------GUUUGCG----UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 95642 0.67 0.970983
Target:  5'- -cGAUGCGcCCGUGCGGcGCGCAuccgacCGGUa -3'
miRNA:   3'- guUUGCGC-GGCAUGUU-UGCGU------GCCAc -5'
22940 5' -51.7 NC_005137.2 + 95491 0.77 0.534517
Target:  5'- --uGCGCGCCGcACGGGCGCAucgcugacguggcCGGUGg -3'
miRNA:   3'- guuUGCGCGGCaUGUUUGCGU-------------GCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.