miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22946 5' -62.5 NC_005137.2 + 26522 0.66 0.595344
Target:  5'- aCGCGGcGCUG-GCUGCguUuuGCGUGCc -3'
miRNA:   3'- cGCGCU-CGACgCGGCG--AggCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 125120 0.66 0.58547
Target:  5'- aGCgGCGGGCcGCGCCGCUCgaaCGUcuugacaaUGCAc -3'
miRNA:   3'- -CG-CGCUCGaCGCGGCGAG---GCGc-------ACGU- -5'
22946 5' -62.5 NC_005137.2 + 87261 0.66 0.565823
Target:  5'- gGCGCuuGUUgGCGuuGUuaacggCCGCGUGCAc -3'
miRNA:   3'- -CGCGcuCGA-CGCggCGa-----GGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 97621 0.66 0.54635
Target:  5'- uGCGCGAGCgucaCGCCGCcacuaCCaUGUGCc -3'
miRNA:   3'- -CGCGCUCGac--GCGGCGa----GGcGCACGu -5'
22946 5' -62.5 NC_005137.2 + 100053 0.67 0.526141
Target:  5'- cGCGCGGcGCguucagcaugcuuUGUGCCGCggCGCGcgGCAc -3'
miRNA:   3'- -CGCGCU-CG-------------ACGCGGCGagGCGCa-CGU- -5'
22946 5' -62.5 NC_005137.2 + 98202 0.67 0.498714
Target:  5'- uGCGCGAaaggcGCUGCuggacCCGCUcgcagcgcCCGaCGUGCAc -3'
miRNA:   3'- -CGCGCU-----CGACGc----GGCGA--------GGC-GCACGU- -5'
22946 5' -62.5 NC_005137.2 + 89093 0.67 0.498714
Target:  5'- gGCGCGGGCgaaacGCGCgUGUUuaGCGUGUu -3'
miRNA:   3'- -CGCGCUCGa----CGCG-GCGAggCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 100110 0.67 0.489404
Target:  5'- gGCGCGcGGCcGCgGCCGUugUCCaacauGCGUGCGc -3'
miRNA:   3'- -CGCGC-UCGaCG-CGGCG--AGG-----CGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 67697 0.68 0.480176
Target:  5'- gGCGCGcGUUuGUGCCGCcUCGCG-GCGu -3'
miRNA:   3'- -CGCGCuCGA-CGCGGCGaGGCGCaCGU- -5'
22946 5' -62.5 NC_005137.2 + 63799 0.68 0.471034
Target:  5'- gGCGCGAcGCgaugcGCGaCCGUcgCCGCGgcgGCGu -3'
miRNA:   3'- -CGCGCU-CGa----CGC-GGCGa-GGCGCa--CGU- -5'
22946 5' -62.5 NC_005137.2 + 96421 0.68 0.471034
Target:  5'- cGCGCG-GCgacGCGCC-CgCCGCGUuGCGu -3'
miRNA:   3'- -CGCGCuCGa--CGCGGcGaGGCGCA-CGU- -5'
22946 5' -62.5 NC_005137.2 + 22406 0.68 0.471034
Target:  5'- uCGgGAGC-GCGCUGCUCaaaGUGCAc -3'
miRNA:   3'- cGCgCUCGaCGCGGCGAGgcgCACGU- -5'
22946 5' -62.5 NC_005137.2 + 62212 0.68 0.453019
Target:  5'- -aGCGAGUuUGCGCUGCcgcgaucugUCCGC-UGCAc -3'
miRNA:   3'- cgCGCUCG-ACGCGGCG---------AGGCGcACGU- -5'
22946 5' -62.5 NC_005137.2 + 49688 0.68 0.444154
Target:  5'- gGCGCGcGGCgguaacuacGCGCCGCUUgGCcgGUGUAg -3'
miRNA:   3'- -CGCGC-UCGa--------CGCGGCGAGgCG--CACGU- -5'
22946 5' -62.5 NC_005137.2 + 31798 0.68 0.435387
Target:  5'- aGCGUG-GUcGCGuCCGCg-CGCGUGCAc -3'
miRNA:   3'- -CGCGCuCGaCGC-GGCGagGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 12096 0.68 0.432777
Target:  5'- aGUGCGAGUUGCGCUGCagaaacggUgacgguguuuaaagCGCGUGCc -3'
miRNA:   3'- -CGCGCUCGACGCGGCGa-------G--------------GCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 123108 0.69 0.418158
Target:  5'- uGCGCaaugGAGCUGCGCCG----GUGUGCAc -3'
miRNA:   3'- -CGCG----CUCGACGCGGCgaggCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 17912 0.69 0.4097
Target:  5'- gGCGCGuGCa-CGUCGUUCCGgaGUGCAa -3'
miRNA:   3'- -CGCGCuCGacGCGGCGAGGCg-CACGU- -5'
22946 5' -62.5 NC_005137.2 + 97997 0.69 0.4097
Target:  5'- gGCGUGGG-UGCGcCCGCcaaguggCCaGCGUGCAc -3'
miRNA:   3'- -CGCGCUCgACGC-GGCGa------GG-CGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 113044 0.69 0.4097
Target:  5'- aGCGuCGGGUacGCGCaGC-CCGCGUGCu -3'
miRNA:   3'- -CGC-GCUCGa-CGCGgCGaGGCGCACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.