Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22953 | 3' | -54.1 | NC_005137.2 | + | 131095 | 0.72 | 0.669129 |
Target: 5'- -aAAGCGCGCGCGUcgUCGUaCC-UGCCg -3' miRNA: 3'- gaUUUGUGCGCGCAa-AGCG-GGcGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 130850 | 0.75 | 0.545382 |
Target: 5'- -aGAACGCGUuggacGCGca--GCCCGCGCCu -3' miRNA: 3'- gaUUUGUGCG-----CGCaaagCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 130763 | 0.69 | 0.832538 |
Target: 5'- -----gGCGCGCGU---GUCCGCGCUu -3' miRNA: 3'- gauuugUGCGCGCAaagCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 124395 | 0.66 | 0.939608 |
Target: 5'- gCUGcGCGCGCGuCGUUUCaGCgCGCaGUUg -3' miRNA: 3'- -GAUuUGUGCGC-GCAAAG-CGgGCG-CGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 124012 | 0.72 | 0.689711 |
Target: 5'- aUAAAUGCGCgGCGUguaaGCCgCGCGCUc -3' miRNA: 3'- gAUUUGUGCG-CGCAaag-CGG-GCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 122635 | 0.74 | 0.565722 |
Target: 5'- ---uGCGCGUgauGCGguugaugUCGCCCGCGCUc -3' miRNA: 3'- gauuUGUGCG---CGCaa-----AGCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 122417 | 0.66 | 0.934701 |
Target: 5'- gCUGuuAAgACGCGgGUUUUGCUgcagCGCGCg -3' miRNA: 3'- -GAU--UUgUGCGCgCAAAGCGG----GCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 119841 | 0.68 | 0.893501 |
Target: 5'- gCUAAGC-UGUGUGcg-CGCgCCGUGCCu -3' miRNA: 3'- -GAUUUGuGCGCGCaaaGCG-GGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 118101 | 0.68 | 0.894173 |
Target: 5'- -gAGACGCGUGCGgugcaacaaggugCGCaCCGUGaCCg -3' miRNA: 3'- gaUUUGUGCGCGCaaa----------GCG-GGCGC-GG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 113039 | 0.68 | 0.886653 |
Target: 5'- -cGggUACGCGCa----GCCCGCGUg -3' miRNA: 3'- gaUuuGUGCGCGcaaagCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 112864 | 0.66 | 0.939608 |
Target: 5'- aCUAu-CAUGgGCGUggacgacgUGCCCGCGUUu -3' miRNA: 3'- -GAUuuGUGCgCGCAaa------GCGGGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 112700 | 0.7 | 0.797343 |
Target: 5'- uUAAACGCGgGCacgUCGUCCaCGCCc -3' miRNA: 3'- gAUUUGUGCgCGcaaAGCGGGcGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 110830 | 0.66 | 0.94869 |
Target: 5'- --cGACGCGCaaGagUCGUgCGCGCUg -3' miRNA: 3'- gauUUGUGCGcgCaaAGCGgGCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 110791 | 0.68 | 0.900114 |
Target: 5'- aCUAAAagcgUACGCGC-UUUCGCaauCGaCGCCg -3' miRNA: 3'- -GAUUU----GUGCGCGcAAAGCGg--GC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 110639 | 0.74 | 0.565722 |
Target: 5'- -cAAACGCGCcgacgGCGUUUgGCuuGUGCCc -3' miRNA: 3'- gaUUUGUGCG-----CGCAAAgCGggCGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 110582 | 0.69 | 0.849043 |
Target: 5'- ---uGCACGCucacCGUcgCGCCCGuUGCCa -3' miRNA: 3'- gauuUGUGCGc---GCAaaGCGGGC-GCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 108897 | 0.72 | 0.699932 |
Target: 5'- -cAAACgAUGCGCGUcgUUUGUCUGCGCg -3' miRNA: 3'- gaUUUG-UGCGCGCA--AAGCGGGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 108131 | 0.67 | 0.92955 |
Target: 5'- ---uGCGCGCGCGUcaaCGCgaccgaUCGCGCa -3' miRNA: 3'- gauuUGUGCGCGCAaa-GCG------GGCGCGg -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 106278 | 0.67 | 0.92955 |
Target: 5'- -cAGGCACGCGa----UGCCCcacgGCGCCa -3' miRNA: 3'- gaUUUGUGCGCgcaaaGCGGG----CGCGG- -5' |
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22953 | 3' | -54.1 | NC_005137.2 | + | 104685 | 0.73 | 0.617288 |
Target: 5'- cCUcGACGCGCGUGUUagaGUCCagcGCGCCg -3' miRNA: 3'- -GAuUUGUGCGCGCAAag-CGGG---CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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