miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22959 3' -48.3 NC_005137.2 + 75709 0.66 0.998972
Target:  5'- aAUGAGUUUgUGUAcaaacgagacgccGCCGGucaagcuguuuguCAACGGCa -3'
miRNA:   3'- gUACUCGAAaACGU-------------UGGCU-------------GUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 49841 0.66 0.998743
Target:  5'- aCAUGAGCauguugUUUUGCAAacuguuuaaacauCCGuGCAggucuugGCGGCg -3'
miRNA:   3'- -GUACUCG------AAAACGUU-------------GGC-UGU-------UGCCG- -5'
22959 3' -48.3 NC_005137.2 + 34085 0.66 0.998692
Target:  5'- aCGUGcGCgcgaaugccgGCAAacCCGACAACGuGCg -3'
miRNA:   3'- -GUACuCGaaaa------CGUU--GGCUGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 50436 0.66 0.998529
Target:  5'- gGUGGGCc---GCGaaaaACUGACcGCGGCu -3'
miRNA:   3'- gUACUCGaaaaCGU----UGGCUGuUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 63454 0.66 0.998529
Target:  5'- --aGGGCgcgcgUUGUGcCCGcgaGCGACGGCg -3'
miRNA:   3'- guaCUCGaa---AACGUuGGC---UGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 96293 0.66 0.998529
Target:  5'- --gGAcGCg--UGCAuucGCCGACAcgcCGGCg -3'
miRNA:   3'- guaCU-CGaaaACGU---UGGCUGUu--GCCG- -5'
22959 3' -48.3 NC_005137.2 + 63008 0.66 0.998529
Target:  5'- cCAUGGuGCg---GC-GCCGGCGuguCGGCa -3'
miRNA:   3'- -GUACU-CGaaaaCGuUGGCUGUu--GCCG- -5'
22959 3' -48.3 NC_005137.2 + 30785 0.66 0.998218
Target:  5'- --aGAGUUUUUGUcgUCGuCGACGcGCa -3'
miRNA:   3'- guaCUCGAAAACGuuGGCuGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 75284 0.66 0.998218
Target:  5'- ---cGGCUguaaCGGCgGGCAACGGCg -3'
miRNA:   3'- guacUCGAaaacGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 80228 0.66 0.998218
Target:  5'- gGUGAacgGCUgcgcggUUGCGuUUGAUGACGGCg -3'
miRNA:   3'- gUACU---CGAa-----AACGUuGGCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 63801 0.67 0.997477
Target:  5'- --cGGGCgcgacgcgaugcGCGACCGucgccGCGGCGGCg -3'
miRNA:   3'- guaCUCGaaaa--------CGUUGGC-----UGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 78756 0.67 0.997431
Target:  5'- --cGGGCgccgUUUGUAACCagaGCuucuGCGGCg -3'
miRNA:   3'- guaCUCGa---AAACGUUGGc--UGu---UGCCG- -5'
22959 3' -48.3 NC_005137.2 + 36108 0.67 0.995724
Target:  5'- --cGAcGUUuaaUUUGUAACaGGCAACGGCa -3'
miRNA:   3'- guaCU-CGA---AAACGUUGgCUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 79574 0.67 0.994983
Target:  5'- aAUGAGCUUgcGCGccGCCGuGCGAUaGCg -3'
miRNA:   3'- gUACUCGAAaaCGU--UGGC-UGUUGcCG- -5'
22959 3' -48.3 NC_005137.2 + 97658 0.67 0.994983
Target:  5'- gAUGGGCacuuugUUUUGCAcCaaauaGGCAAUGGCu -3'
miRNA:   3'- gUACUCG------AAAACGUuGg----CUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 33789 0.68 0.99414
Target:  5'- -uUGuGCUgugccaacgUUGCAACUcggagcuuaauGGCGGCGGCa -3'
miRNA:   3'- guACuCGAa--------AACGUUGG-----------CUGUUGCCG- -5'
22959 3' -48.3 NC_005137.2 + 128780 0.68 0.993186
Target:  5'- cCGUGGGCg--UGCuAACCuACAaacuauuaaccgGCGGCa -3'
miRNA:   3'- -GUACUCGaaaACG-UUGGcUGU------------UGCCG- -5'
22959 3' -48.3 NC_005137.2 + 19610 0.68 0.993186
Target:  5'- --cGAGCUUUUGCGugUGGucaAACaGCa -3'
miRNA:   3'- guaCUCGAAAACGUugGCUg--UUGcCG- -5'
22959 3' -48.3 NC_005137.2 + 37831 0.68 0.992981
Target:  5'- -cUGAGCgcuagcaucgUGCuGACCGGCGACGcGUu -3'
miRNA:   3'- guACUCGaaa-------ACG-UUGGCUGUUGC-CG- -5'
22959 3' -48.3 NC_005137.2 + 87086 0.68 0.992112
Target:  5'- gCAUGAacGCcg-UGCAcgcgGCCGuuaACAACGGCc -3'
miRNA:   3'- -GUACU--CGaaaACGU----UGGC---UGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.