miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22973 3' -49.2 NC_005137.2 + 100159 0.66 0.997489
Target:  5'- cGGGCGCGCCGggucguCAGcUUUgauuucccaaUGCGUcGCAAAa -3'
miRNA:   3'- -CCUGCGCGGC------GUC-AAA----------AUGCA-UGUUU- -5'
22973 3' -49.2 NC_005137.2 + 108073 0.66 0.997489
Target:  5'- cGGCGCGuuguuCCGCGGUaagcugggcUACGUGCAu- -3'
miRNA:   3'- cCUGCGC-----GGCGUCAaa-------AUGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 92842 0.66 0.99701
Target:  5'- cGACGCGCC-CAGUUUUu--UACAu- -3'
miRNA:   3'- cCUGCGCGGcGUCAAAAugcAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 106842 0.66 0.99701
Target:  5'- uGGAguUGCGCaCGCAGU---ACGcGCAGAu -3'
miRNA:   3'- -CCU--GCGCG-GCGUCAaaaUGCaUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 115307 0.66 0.996458
Target:  5'- cGGGCgauuGCGCCGCGGUUgaACGcugAgGAGc -3'
miRNA:   3'- -CCUG----CGCGGCGUCAAaaUGCa--UgUUU- -5'
22973 3' -49.2 NC_005137.2 + 112026 0.66 0.995824
Target:  5'- uGACGCGCUGCG-----ACGUGCu-- -3'
miRNA:   3'- cCUGCGCGGCGUcaaaaUGCAUGuuu -5'
22973 3' -49.2 NC_005137.2 + 22539 0.66 0.995824
Target:  5'- --cUGgGCCGUAGUUUgguCGUACAc- -3'
miRNA:   3'- ccuGCgCGGCGUCAAAau-GCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 4213 0.66 0.995824
Target:  5'- -cGCGCGCUGCuucaaaACGUGCAAu -3'
miRNA:   3'- ccUGCGCGGCGucaaaaUGCAUGUUu -5'
22973 3' -49.2 NC_005137.2 + 21206 0.67 0.994279
Target:  5'- uGGAUGCuUCGCAGaguUUUUACGUggGCGAc -3'
miRNA:   3'- -CCUGCGcGGCGUC---AAAAUGCA--UGUUu -5'
22973 3' -49.2 NC_005137.2 + 24430 0.67 0.993349
Target:  5'- -aGCGCGCCGUucg-UUACaGUGCAAu -3'
miRNA:   3'- ccUGCGCGGCGucaaAAUG-CAUGUUu -5'
22973 3' -49.2 NC_005137.2 + 48906 0.67 0.993349
Target:  5'- cGAuCGCGCCGCcuuGUUcgGCG-ACAAGa -3'
miRNA:   3'- cCU-GCGCGGCGu--CAAaaUGCaUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 98185 0.67 0.992303
Target:  5'- uGGACcCGCuCGCAGcgcccgACGUGCAc- -3'
miRNA:   3'- -CCUGcGCG-GCGUCaaaa--UGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 112459 0.67 0.991129
Target:  5'- gGGACGCugaUGCAGUUa-ACGUACAc- -3'
miRNA:   3'- -CCUGCGcg-GCGUCAAaaUGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 47236 0.67 0.990878
Target:  5'- aGACuGCGCCGCugcggu-CGUACAAAc -3'
miRNA:   3'- cCUG-CGCGGCGucaaaauGCAUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 79908 0.67 0.989819
Target:  5'- uGAgGCGCCGCAaGUggucaaugcgUAUGUGCAc- -3'
miRNA:   3'- cCUgCGCGGCGU-CAaa--------AUGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 98143 0.68 0.988362
Target:  5'- cGGGCGCacccacGCCGCGcgcccGUUUUGCcUACAAu -3'
miRNA:   3'- -CCUGCG------CGGCGU-----CAAAAUGcAUGUUu -5'
22973 3' -49.2 NC_005137.2 + 93690 0.68 0.984967
Target:  5'- uGGACaCGaCGCAGUUUUcggccgacGCGUGCAu- -3'
miRNA:   3'- -CCUGcGCgGCGUCAAAA--------UGCAUGUuu -5'
22973 3' -49.2 NC_005137.2 + 131033 0.68 0.98301
Target:  5'- cGGCGCGuCCGCG-----GCGUACAAu -3'
miRNA:   3'- cCUGCGC-GGCGUcaaaaUGCAUGUUu -5'
22973 3' -49.2 NC_005137.2 + 72460 0.68 0.980642
Target:  5'- aGugGCGCCGCguuggcgucaauuAGgcacACGUGCAAAc -3'
miRNA:   3'- cCugCGCGGCG-------------UCaaaaUGCAUGUUU- -5'
22973 3' -49.2 NC_005137.2 + 119869 0.69 0.978527
Target:  5'- uGGGCgcuGCGCgGCGGga-UGCGUACGu- -3'
miRNA:   3'- -CCUG---CGCGgCGUCaaaAUGCAUGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.