Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23025 | 3' | -61.6 | NC_005178.1 | + | 15024 | 0.68 | 0.230255 |
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Target: 5'- gCUU--GCGGaUGGCGGCCUCGaCCAc -3' miRNA: 3'- gGGAcuUGCC-ACCGCCGGAGCcGGUu -5' |
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| 23025 | 3' | -61.6 | NC_005178.1 | + | 24103 | 0.68 | 0.230255 |
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Target: 5'- -gUUG-ACGGUGGCGGUCUU-GCCGAu -3' miRNA: 3'- ggGACuUGCCACCGCCGGAGcCGGUU- -5' |
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| 23025 | 3' | -61.6 | NC_005178.1 | + | 12416 | 0.67 | 0.242459 |
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Target: 5'- gCCUGGGCGGcacguugacgGGCGGUUUCGaGCUg- -3' miRNA: 3'- gGGACUUGCCa---------CCGCCGGAGC-CGGuu -5' |
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| 23025 | 3' | -61.6 | NC_005178.1 | + | 28123 | 0.67 | 0.24876 |
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Target: 5'- gCCUGGGCGGUGGCa-CCgauggCGGCg-- -3' miRNA: 3'- gGGACUUGCCACCGccGGa----GCCGguu -5' |
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| 23025 | 3' | -61.6 | NC_005178.1 | + | 35061 | 0.67 | 0.255196 |
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Target: 5'- gCUCUGcgacaGGCuGGUcGGC-GCCUCGGCCAGc -3' miRNA: 3'- -GGGAC-----UUG-CCA-CCGcCGGAGCCGGUU- -5' |
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| 23025 | 3' | -61.6 | NC_005178.1 | + | 17145 | 0.67 | 0.261104 |
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Target: 5'- cCCUUGcGCuccaGGUacucaauGGCGGCCUCcGGCCGc -3' miRNA: 3'- -GGGACuUG----CCA-------CCGCCGGAG-CCGGUu -5' |
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| 23025 | 3' | -61.6 | NC_005178.1 | + | 4603 | 0.66 | 0.2916 |
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Target: 5'- aCCaCUGGGCGGcguccggcucgaugGGCaGGCCggagcguugccgcUCGGCCAGc -3' miRNA: 3'- -GG-GACUUGCCa-------------CCG-CCGG-------------AGCCGGUU- -5' |
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| 23025 | 3' | -61.6 | NC_005178.1 | + | 12801 | 0.66 | 0.303362 |
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Target: 5'- uCCCUGGA-GGUcGCGGCCgccauguUCGGCg-- -3' miRNA: 3'- -GGGACUUgCCAcCGCCGG-------AGCCGguu -5' |
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| 23025 | 3' | -61.6 | NC_005178.1 | + | 2735 | 0.66 | 0.311657 |
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Target: 5'- gCCCUGGGCGa-GGUGGCCaccaaggCGGuCCGc -3' miRNA: 3'- -GGGACUUGCcaCCGCCGGa------GCC-GGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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