Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23025 | 3' | -61.6 | NC_005178.1 | + | 24103 | 0.68 | 0.230255 |
Target: 5'- -gUUG-ACGGUGGCGGUCUU-GCCGAu -3' miRNA: 3'- ggGACuUGCCACCGCCGGAGcCGGUU- -5' |
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23025 | 3' | -61.6 | NC_005178.1 | + | 24420 | 0.7 | 0.150303 |
Target: 5'- aCCUGcuUGGUGGCGGCgUacucauaGGCCGc -3' miRNA: 3'- gGGACuuGCCACCGCCGgAg------CCGGUu -5' |
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23025 | 3' | -61.6 | NC_005178.1 | + | 25703 | 0.71 | 0.139977 |
Target: 5'- gCCUGcugccggucgaacucGGCGGUGGCuuucgccgcaGCCUCGGCCGc -3' miRNA: 3'- gGGAC---------------UUGCCACCGc---------CGGAGCCGGUu -5' |
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23025 | 3' | -61.6 | NC_005178.1 | + | 28123 | 0.67 | 0.24876 |
Target: 5'- gCCUGGGCGGUGGCa-CCgauggCGGCg-- -3' miRNA: 3'- gGGACUUGCCACCGccGGa----GCCGguu -5' |
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23025 | 3' | -61.6 | NC_005178.1 | + | 28157 | 0.68 | 0.19517 |
Target: 5'- -gCUG-ACGGUcGGCGccucggcuguauccGCCUCGGCCGg -3' miRNA: 3'- ggGACuUGCCA-CCGC--------------CGGAGCCGGUu -5' |
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23025 | 3' | -61.6 | NC_005178.1 | + | 30792 | 0.73 | 0.091116 |
Target: 5'- gCCUGGcaGCGGUcGCGGCCUCgaccugGGCCGg -3' miRNA: 3'- gGGACU--UGCCAcCGCCGGAG------CCGGUu -5' |
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23025 | 3' | -61.6 | NC_005178.1 | + | 31661 | 0.71 | 0.127456 |
Target: 5'- gCCUGGACGG-GGCGGaCCagguccaGGCCGg -3' miRNA: 3'- gGGACUUGCCaCCGCC-GGag-----CCGGUu -5' |
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23025 | 3' | -61.6 | NC_005178.1 | + | 35061 | 0.67 | 0.255196 |
Target: 5'- gCUCUGcgacaGGCuGGUcGGC-GCCUCGGCCAGc -3' miRNA: 3'- -GGGAC-----UUG-CCA-CCGcCGGAGCCGGUU- -5' |
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23025 | 3' | -61.6 | NC_005178.1 | + | 35475 | 0.69 | 0.191574 |
Target: 5'- -gCUGu-CGGUGGCGGCCagcgccggGGCCAGu -3' miRNA: 3'- ggGACuuGCCACCGCCGGag------CCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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