miRNA display CGI

Results 21 - 29 of 29 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23025	3'	-61.6	NC_005178.1	+	6579	0.69	0.175396
	Target:  5'- cCCUUGGccaaccgcaugcgcACGGUGGCGGCggugaccUGGCCGAa -3' miRNA:   3'- -GGGACU--------------UGCCACCGCCGga-----GCCGGUU- -5'
23025	3'	-61.6	NC_005178.1	+	16640	0.69	0.175396
	Target:  5'- aCCagGGGCGGUaaugacguugccauGGCGGCCaggUCGGCCc- -3' miRNA:   3'- gGGa-CUUGCCA--------------CCGCCGG---AGCCGGuu -5'
23025	3'	-61.6	NC_005178.1	+	24420	0.7	0.150303
	Target:  5'- aCCUGcuUGGUGGCGGCgUacucauaGGCCGc -3' miRNA:   3'- gGGACuuGCCACCGCCGgAg------CCGGUu -5'
23025	3'	-61.6	NC_005178.1	+	25703	0.71	0.139977
	Target:  5'- gCCUGcugccggucgaacucGGCGGUGGCuuucgccgcaGCCUCGGCCGc -3' miRNA:   3'- gGGAC---------------UUGCCACCGc---------CGGAGCCGGUu -5'
23025	3'	-61.6	NC_005178.1	+	20532	0.71	0.136182
	Target:  5'- -gCUGGGCGGUGGCGGCggcgaucugCUCgacguccgcguccugGGCCAGg -3' miRNA:   3'- ggGACUUGCCACCGCCG---------GAG---------------CCGGUU- -5'
23025	3'	-61.6	NC_005178.1	+	31661	0.71	0.127456
	Target:  5'- gCCUGGACGG-GGCGGaCCagguccaGGCCGg -3' miRNA:   3'- gGGACUUGCCaCCGCC-GGag-----CCGGUu -5'
23025	3'	-61.6	NC_005178.1	+	4499	0.78	0.037403
	Target:  5'- aCCUGGGCGGUGGUGGCUUgGGUgGu -3' miRNA:   3'- gGGACUUGCCACCGCCGGAgCCGgUu -5'
23025	3'	-61.6	NC_005178.1	+	5335	1.07	0.000207
	Target:  5'- gCCCUGAACGGUGGCGGCCUCGGCCAAc -3' miRNA:   3'- -GGGACUUGCCACCGCCGGAGCCGGUU- -5'
23025	3'	-61.6	NC_005178.1	+	4603	0.66	0.2916
	Target:  5'- aCCaCUGGGCGGcguccggcucgaugGGCaGGCCggagcguugccgcUCGGCCAGc -3' miRNA:   3'- -GG-GACUUGCCa-------------CCG-CCGG-------------AGCCGGUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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