Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 36388 | 0.69 | 0.22534 |
Target: 5'- uCgUCCGCUGUCGGGCAucagauUGAGaaaCGGCa -3' miRNA: 3'- -GgGGGUGACGGUCCGUu-----ACUCc--GCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 33901 | 0.68 | 0.284123 |
Target: 5'- cCUgCCGC-GCCuggcGGCGAUGcucGGCGGCc -3' miRNA: 3'- -GGgGGUGaCGGu---CCGUUACu--CCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 30846 | 0.68 | 0.270087 |
Target: 5'- gCCgcgaCCGCUGCCAGGCgGAUGuccuGGUucagcuccaaGGCg -3' miRNA: 3'- -GGg---GGUGACGGUCCG-UUACu---CCG----------CCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 28699 | 0.66 | 0.398408 |
Target: 5'- aCCCCgACcagauggcgGCCGacaugugggccGGCAA--GGGCGGCg -3' miRNA: 3'- -GGGGgUGa--------CGGU-----------CCGUUacUCCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 28494 | 0.67 | 0.345175 |
Target: 5'- aCUCCGCUGCUgcuGGaCAucaaccaacgaggAUG-GGCGGCg -3' miRNA: 3'- gGGGGUGACGGu--CC-GU-------------UACuCCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 28328 | 0.75 | 0.088175 |
Target: 5'- aCCCCACUGacaCCAuuggcGGCGGccagcGAGGCGGCa -3' miRNA: 3'- gGGGGUGAC---GGU-----CCGUUa----CUCCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 28086 | 0.66 | 0.364633 |
Target: 5'- aCCCgCCAgcuaggggcgucuCUGCUuuccggguuuggccuGGGCGGUGGcaccgauGGCGGCg -3' miRNA: 3'- -GGG-GGU-------------GACGG---------------UCCGUUACU-------CCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 27935 | 0.69 | 0.250087 |
Target: 5'- -aCCCAgUUGCCcuGGGCGGccugGAGGuCGGCg -3' miRNA: 3'- ggGGGU-GACGG--UCCGUUa---CUCC-GCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 27658 | 0.73 | 0.123823 |
Target: 5'- gCCgCCGCUGCCguGGGCAu--GGGCGcGCa -3' miRNA: 3'- -GGgGGUGACGG--UCCGUuacUCCGC-CG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 26628 | 0.71 | 0.171991 |
Target: 5'- aCgCCUAUaGCCAGGCAAUGgacgagcGGGCGaGCc -3' miRNA: 3'- -GgGGGUGaCGGUCCGUUAC-------UCCGC-CG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 26286 | 0.71 | 0.163308 |
Target: 5'- gCCggaaCCACcGCCGGGCAAcUGuccgccauGGCGGCg -3' miRNA: 3'- -GGg---GGUGaCGGUCCGUU-ACu-------CCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 25979 | 0.67 | 0.32967 |
Target: 5'- aUCCCGCUgGCCAGGCuGGUGAccacGuCGGUg -3' miRNA: 3'- gGGGGUGA-CGGUCCG-UUACUc---C-GCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 25495 | 0.76 | 0.080919 |
Target: 5'- uUCCCGCUGUU--GCAggGAGGCGGCg -3' miRNA: 3'- gGGGGUGACGGucCGUuaCUCCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 22261 | 0.68 | 0.297244 |
Target: 5'- -gCCgACcGCCAGGCuggcccgccAGGCGGCg -3' miRNA: 3'- ggGGgUGaCGGUCCGuuac-----UCCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 21769 | 0.67 | 0.306249 |
Target: 5'- gCUCCGCUuuccaacgccaGCCAGGC-----GGCGGCg -3' miRNA: 3'- gGGGGUGA-----------CGGUCCGuuacuCCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 21459 | 0.67 | 0.313912 |
Target: 5'- aCUUCCAuggcgaucuuCUGCCAGGUggUGGGGgccgccgcgaaGGCg -3' miRNA: 3'- -GGGGGU----------GACGGUCCGuuACUCCg----------CCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 20915 | 0.71 | 0.177204 |
Target: 5'- aCCCCGCU-CCAGGaCGccGAGGUcaucGGCg -3' miRNA: 3'- gGGGGUGAcGGUCC-GUuaCUCCG----CCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 20797 | 0.66 | 0.362912 |
Target: 5'- gCUCUGCUGUUGGGuCA---GGGCGGCg -3' miRNA: 3'- gGGGGUGACGGUCC-GUuacUCCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 20577 | 0.75 | 0.093352 |
Target: 5'- gCgCCCACUucGCCGGGuCGGgguuaccgGGGGCGGCg -3' miRNA: 3'- -GgGGGUGA--CGGUCC-GUUa-------CUCCGCCG- -5' |
|||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 20539 | 0.73 | 0.123823 |
Target: 5'- aCCUUCA--GCUGGGCGGUGGcGGCGGCg -3' miRNA: 3'- -GGGGGUgaCGGUCCGUUACU-CCGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home