miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23027 3' -59.6 NC_005178.1 + 7398 0.76 0.07863
Target:  5'- gCCCCUcugucgGCU-CCAGGCGAUGAaGGCGGa -3'
miRNA:   3'- -GGGGG------UGAcGGUCCGUUACU-CCGCCg -5'
23027 3' -59.6 NC_005178.1 + 21459 0.67 0.313912
Target:  5'- aCUUCCAuggcgaucuuCUGCCAGGUggUGGGGgccgccgcgaaGGCg -3'
miRNA:   3'- -GGGGGU----------GACGGUCCGuuACUCCg----------CCG- -5'
23027 3' -59.6 NC_005178.1 + 3684 0.67 0.325677
Target:  5'- aCCCCCGCcugacuguuguagGgCAGGCuguucuucauaucGAUGcccAGGCGGCc -3'
miRNA:   3'- -GGGGGUGa------------CgGUCCG-------------UUAC---UCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 9495 0.66 0.389327
Target:  5'- gUCCCg--GCUAGGCc--GGGGCGGUu -3'
miRNA:   3'- gGGGGugaCGGUCCGuuaCUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 20577 0.75 0.093352
Target:  5'- gCgCCCACUucGCCGGGuCGGgguuaccgGGGGCGGCg -3'
miRNA:   3'- -GgGGGUGA--CGGUCC-GUUa-------CUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 20539 0.73 0.123823
Target:  5'- aCCUUCA--GCUGGGCGGUGGcGGCGGCg -3'
miRNA:   3'- -GGGGGUgaCGGUCCGUUACU-CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 9585 0.73 0.134634
Target:  5'- uUCCCGC-GCCAGGCGGcgcuGGCGGUc -3'
miRNA:   3'- gGGGGUGaCGGUCCGUUacu-CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 36388 0.69 0.22534
Target:  5'- uCgUCCGCUGUCGGGCAucagauUGAGaaaCGGCa -3'
miRNA:   3'- -GgGGGUGACGGUCCGUu-----ACUCc--GCCG- -5'
23027 3' -59.6 NC_005178.1 + 3986 0.68 0.267347
Target:  5'- cCCUCCGCUucgugcagcGcCCAGGCuucguugggggucAUGuGGCGGCg -3'
miRNA:   3'- -GGGGGUGA---------C-GGUCCGu------------UACuCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 10858 0.68 0.29873
Target:  5'- aCgCUCGCgGCUGGGCucggccagGAUGGcGGCGGCg -3'
miRNA:   3'- -GgGGGUGaCGGUCCG--------UUACU-CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 30846 0.68 0.270087
Target:  5'- gCCgcgaCCGCUGCCAGGCgGAUGuccuGGUucagcuccaaGGCg -3'
miRNA:   3'- -GGg---GGUGACGGUCCG-UUACu---CCG----------CCG- -5'
23027 3' -59.6 NC_005178.1 + 11818 0.68 0.26328
Target:  5'- aCCCCCAUgGCuCGGGCcAcgGccGUGGCa -3'
miRNA:   3'- -GGGGGUGaCG-GUCCG-UuaCucCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 25495 0.76 0.080919
Target:  5'- uUCCCGCUGUU--GCAggGAGGCGGCg -3'
miRNA:   3'- gGGGGUGACGGucCGUuaCUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 14896 0.68 0.283408
Target:  5'- -aUCCAUUgcGCCAGGCGguugacccagaacGUGAugcaGGCGGCg -3'
miRNA:   3'- ggGGGUGA--CGGUCCGU-------------UACU----CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 28328 0.75 0.088175
Target:  5'- aCCCCACUGacaCCAuuggcGGCGGccagcGAGGCGGCa -3'
miRNA:   3'- gGGGGUGAC---GGU-----CCGUUa----CUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 27935 0.69 0.250087
Target:  5'- -aCCCAgUUGCCcuGGGCGGccugGAGGuCGGCg -3'
miRNA:   3'- ggGGGU-GACGG--UCCGUUa---CUCC-GCCG- -5'
23027 3' -59.6 NC_005178.1 + 3752 0.68 0.284123
Target:  5'- gCgCCgAUguaGCCGGGCAGUuccuuGGCGGCg -3'
miRNA:   3'- -GgGGgUGa--CGGUCCGUUAcu---CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 17147 0.67 0.321719
Target:  5'- aCCCCUugcGCU-CCAGGUAcucaauGGCGGCc -3'
miRNA:   3'- -GGGGG---UGAcGGUCCGUuacu--CCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 7366 0.75 0.090728
Target:  5'- aCCCCCAUgcGCUGGaGCAGccGGGCGGCg -3'
miRNA:   3'- -GGGGGUGa-CGGUC-CGUUacUCCGCCG- -5'
23027 3' -59.6 NC_005178.1 + 15092 0.73 0.127334
Target:  5'- gCCCCACa-CCAGGCAGUGAuaGGCccgcugcauGGCg -3'
miRNA:   3'- gGGGGUGacGGUCCGUUACU--CCG---------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.