miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23027 5' -55.7 NC_005178.1 + 28547 0.66 0.602902
Target:  5'- gGCGGGGgcCGUcCGCCGcgccACCGGGGgcgucgcCGGCa -3'
miRNA:   3'- -CGUCCC--GUA-GUGGC----UGGUCCUa------GUCG- -5'
23027 5' -55.7 NC_005178.1 + 11964 0.66 0.601778
Target:  5'- cGCAGGcguuGCAUCACagcaccucccgcaCGGCCuGGGcgaucugcUCGGCg -3'
miRNA:   3'- -CGUCC----CGUAGUG-------------GCUGGuCCU--------AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 411 0.66 0.591669
Target:  5'- aGCAGaGGCuccauagaGUCACCG-CCAaugcGGAUC-GCu -3'
miRNA:   3'- -CGUC-CCG--------UAGUGGCuGGU----CCUAGuCG- -5'
23027 5' -55.7 NC_005178.1 + 20450 0.66 0.591669
Target:  5'- cGCcuGGGCGUCcaggGCCGGCUucAGGGcggUCAGg -3'
miRNA:   3'- -CGu-CCCGUAG----UGGCUGG--UCCU---AGUCg -5'
23027 5' -55.7 NC_005178.1 + 31822 0.66 0.591669
Target:  5'- uGUAGGuCGUCGCCGgcauuaccucggGCCAGGcgCugGGCu -3'
miRNA:   3'- -CGUCCcGUAGUGGC------------UGGUCCuaG--UCG- -5'
23027 5' -55.7 NC_005178.1 + 28301 0.66 0.591669
Target:  5'- aGCGaGGCggCAgCGGCCuGGAUagCGGCg -3'
miRNA:   3'- -CGUcCCGuaGUgGCUGGuCCUA--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 24517 0.66 0.580473
Target:  5'- aGCGacGGCAaCACCGucGCCGGuaugcaGAUCAGCg -3'
miRNA:   3'- -CGUc-CCGUaGUGGC--UGGUC------CUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 34583 0.66 0.580473
Target:  5'- cCGGGGa---GCUGGCCGGGcgaGUCGGUg -3'
miRNA:   3'- cGUCCCguagUGGCUGGUCC---UAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 22677 0.66 0.580473
Target:  5'- cCAGGGCGaccUCGCCcaGGCCGagcuGGAUC-GCc -3'
miRNA:   3'- cGUCCCGU---AGUGG--CUGGU----CCUAGuCG- -5'
23027 5' -55.7 NC_005178.1 + 37256 0.66 0.569321
Target:  5'- gGUAGcgauGGCGUCAaacUCGGCCuccAGGcgCAGCg -3'
miRNA:   3'- -CGUC----CCGUAGU---GGCUGG---UCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 17810 0.66 0.558223
Target:  5'- uCGGGGCGaaauuggaUCuuCCGACCGGcccGGUCGGUc -3'
miRNA:   3'- cGUCCCGU--------AGu-GGCUGGUC---CUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 25485 0.66 0.558223
Target:  5'- uGCAGGGaggcggcgacCAUCGCCuuGAuCCGGGccgccugcugGUCGGCu -3'
miRNA:   3'- -CGUCCC----------GUAGUGG--CU-GGUCC----------UAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 24427 0.66 0.558223
Target:  5'- -aAGGGCAUCAacCUGGCCgaAGG--CGGCg -3'
miRNA:   3'- cgUCCCGUAGU--GGCUGG--UCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 15599 0.66 0.547187
Target:  5'- aGCAGGGg--CACCu-CCAGGcUCAGg -3'
miRNA:   3'- -CGUCCCguaGUGGcuGGUCCuAGUCg -5'
23027 5' -55.7 NC_005178.1 + 17258 0.67 0.525333
Target:  5'- cCAGGGCGUCGCgGAuguCCuGGAgcacauccaGGCg -3'
miRNA:   3'- cGUCCCGUAGUGgCU---GGuCCUag-------UCG- -5'
23027 5' -55.7 NC_005178.1 + 11155 0.67 0.525333
Target:  5'- aGCGcGGCGcUGCCGGCCgagguggaugcGGGAUCAGg -3'
miRNA:   3'- -CGUcCCGUaGUGGCUGG-----------UCCUAGUCg -5'
23027 5' -55.7 NC_005178.1 + 26912 0.67 0.525333
Target:  5'- cGCGGGaaGCAauUCACCGAugcccuUCAGGAaaUCAGg -3'
miRNA:   3'- -CGUCC--CGU--AGUGGCU------GGUCCU--AGUCg -5'
23027 5' -55.7 NC_005178.1 + 24318 0.67 0.524248
Target:  5'- cGCAGGGCGUaaUACUGcgggucgaggggcGCCGGGcugcucgcgcuGUCGGUg -3'
miRNA:   3'- -CGUCCCGUA--GUGGC-------------UGGUCC-----------UAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 20184 0.67 0.514529
Target:  5'- aGUAGaGGUAcUCGCCGuCUucGAUCAGCu -3'
miRNA:   3'- -CGUC-CCGU-AGUGGCuGGucCUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 25898 0.67 0.514529
Target:  5'- uGCcGGcGCAgaUCACCGACguGGucacCAGCc -3'
miRNA:   3'- -CGuCC-CGU--AGUGGCUGguCCua--GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.