miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23030 5' -56.5 NC_005178.1 + 19749 0.66 0.566514
Target:  5'- -aACCGU-CCGGCGCCaucUUcUGGCcaAGCc -3'
miRNA:   3'- ggUGGCAuGGUCGCGG---AAcACCG--UCG- -5'
23030 5' -56.5 NC_005178.1 + 27944 0.66 0.555509
Target:  5'- gCC-CCGUugacCCAGuUGCCcUG-GGCGGCc -3'
miRNA:   3'- -GGuGGCAu---GGUC-GCGGaACaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 35726 0.66 0.544567
Target:  5'- uCCGCUccaggACguGCGCCUUGUccuGcGCAGUg -3'
miRNA:   3'- -GGUGGca---UGguCGCGGAACA---C-CGUCG- -5'
23030 5' -56.5 NC_005178.1 + 22159 0.66 0.544567
Target:  5'- gCGCUGcUGCCGGUuacGgCUUcUGGCAGCu -3'
miRNA:   3'- gGUGGC-AUGGUCG---CgGAAcACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 18489 0.66 0.544567
Target:  5'- uUACCGUugCAGCGCga----GCGGCg -3'
miRNA:   3'- gGUGGCAugGUCGCGgaacacCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 8755 0.66 0.544567
Target:  5'- -uGCCGUgggcgacuugGCCAGCGUgcg--GGCGGCg -3'
miRNA:   3'- ggUGGCA----------UGGUCGCGgaacaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 24578 0.66 0.544567
Target:  5'- -aGCCGgaUACCGGCGaCCUg--GGCcGCu -3'
miRNA:   3'- ggUGGC--AUGGUCGC-GGAacaCCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 11228 0.66 0.543476
Target:  5'- aCCAUCGUcgcguCCAGCGUCUUcggcccaauccugGUGGUuuaccuGCa -3'
miRNA:   3'- -GGUGGCAu----GGUCGCGGAA-------------CACCGu-----CG- -5'
23030 5' -56.5 NC_005178.1 + 27729 0.66 0.533696
Target:  5'- gCGCUGUugC-GCGCCcaUGcccacGGCAGCg -3'
miRNA:   3'- gGUGGCAugGuCGCGGa-ACa----CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 9325 0.66 0.533696
Target:  5'- aCGCCGUuuCCuGCGCCUgcgacgagUGccUGGCAcgGCg -3'
miRNA:   3'- gGUGGCAu-GGuCGCGGA--------AC--ACCGU--CG- -5'
23030 5' -56.5 NC_005178.1 + 33577 0.66 0.533696
Target:  5'- gCGCUugaagaacuCCcGCGCCUgccgGUGGCAGUa -3'
miRNA:   3'- gGUGGcau------GGuCGCGGAa---CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 12429 0.66 0.522903
Target:  5'- gCCGCCGg--UAGUgGCCUg--GGCGGCa -3'
miRNA:   3'- -GGUGGCaugGUCG-CGGAacaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 20816 0.66 0.522903
Target:  5'- gCACCGagguacgcCCGGCGCUcugcugUUGggucagGGCGGCg -3'
miRNA:   3'- gGUGGCau------GGUCGCGG------AACa-----CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 6050 0.66 0.522903
Target:  5'- -aGCCGUGaugaagaCGGUGCCgagggGUGGCcGCc -3'
miRNA:   3'- ggUGGCAUg------GUCGCGGaa---CACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 13019 0.66 0.522903
Target:  5'- cCCGCCGUGaaGGUGCagcUGcUGGcCAGCc -3'
miRNA:   3'- -GGUGGCAUggUCGCGga-AC-ACC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 3445 0.66 0.512195
Target:  5'- uCCACCGgccugGCCgAGUcgGCCcugGUGGUGGUc -3'
miRNA:   3'- -GGUGGCa----UGG-UCG--CGGaa-CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 31834 0.66 0.509
Target:  5'- aCGUCGagcUAUCAGCGCCUgcUGUccaccuuggacaacGGCAGCg -3'
miRNA:   3'- gGUGGC---AUGGUCGCGGA--ACA--------------CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 9402 0.67 0.501578
Target:  5'- gCGCCGUGCCAG-GCaCUcGUcGCAGg -3'
miRNA:   3'- gGUGGCAUGGUCgCG-GAaCAcCGUCg -5'
23030 5' -56.5 NC_005178.1 + 34647 0.67 0.49106
Target:  5'- cUCACCGacucgcccgGCCAGCuCCccgGUGGCAcGCc -3'
miRNA:   3'- -GGUGGCa--------UGGUCGcGGaa-CACCGU-CG- -5'
23030 5' -56.5 NC_005178.1 + 28317 0.67 0.49106
Target:  5'- aCCAUUGgcggcgGCCAGCGag--GcGGCAGCg -3'
miRNA:   3'- -GGUGGCa-----UGGUCGCggaaCaCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.