miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23030 5' -56.5 NC_005178.1 + 35726 0.66 0.544567
Target:  5'- uCCGCUccaggACguGCGCCUUGUccuGcGCAGUg -3'
miRNA:   3'- -GGUGGca---UGguCGCGGAACA---C-CGUCG- -5'
23030 5' -56.5 NC_005178.1 + 34647 0.67 0.49106
Target:  5'- cUCACCGacucgcccgGCCAGCuCCccgGUGGCAcGCc -3'
miRNA:   3'- -GGUGGCa--------UGGUCGcGGaa-CACCGU-CG- -5'
23030 5' -56.5 NC_005178.1 + 33577 0.66 0.533696
Target:  5'- gCGCUugaagaacuCCcGCGCCUgccgGUGGCAGUa -3'
miRNA:   3'- gGUGGcau------GGuCGCGGAa---CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 32682 0.67 0.460145
Target:  5'- aCCGCuCGgcgACCGG-GUCUUGUacaGCAGCg -3'
miRNA:   3'- -GGUG-GCa--UGGUCgCGGAACAc--CGUCG- -5'
23030 5' -56.5 NC_005178.1 + 31834 0.66 0.509
Target:  5'- aCGUCGagcUAUCAGCGCCUgcUGUccaccuuggacaacGGCAGCg -3'
miRNA:   3'- gGUGGC---AUGGUCGCGGA--ACA--------------CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 31296 0.7 0.30743
Target:  5'- -aGCCGUGacCCAGCGCCg---GGCuauGCg -3'
miRNA:   3'- ggUGGCAU--GGUCGCGGaacaCCGu--CG- -5'
23030 5' -56.5 NC_005178.1 + 30633 0.7 0.339614
Target:  5'- gCCACCGauuucggcagcACCAGCGCCUg--GGuCGGUu -3'
miRNA:   3'- -GGUGGCa----------UGGUCGCGGAacaCC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 29476 0.69 0.365312
Target:  5'- -aACCGaGCCAGCGCCc---GGCGGg -3'
miRNA:   3'- ggUGGCaUGGUCGCGGaacaCCGUCg -5'
23030 5' -56.5 NC_005178.1 + 28958 0.7 0.299757
Target:  5'- aUCGCCGUgcGCCAggugacccugcGCGCCccUGgccugGGCGGCa -3'
miRNA:   3'- -GGUGGCA--UGGU-----------CGCGGa-ACa----CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 28317 0.67 0.49106
Target:  5'- aCCAUUGgcggcgGCCAGCGag--GcGGCAGCg -3'
miRNA:   3'- -GGUGGCa-----UGGUCGCggaaCaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 28182 0.78 0.091717
Target:  5'- uCCGCCucgGCCGGCGCCcUGgcgacugcUGGCGGCa -3'
miRNA:   3'- -GGUGGca-UGGUCGCGGaAC--------ACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 27944 0.66 0.555509
Target:  5'- gCC-CCGUugacCCAGuUGCCcUG-GGCGGCc -3'
miRNA:   3'- -GGuGGCAu---GGUC-GCGGaACaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 27729 0.66 0.533696
Target:  5'- gCGCUGUugC-GCGCCcaUGcccacGGCAGCg -3'
miRNA:   3'- gGUGGCAugGuCGCGGa-ACa----CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 27664 0.68 0.399741
Target:  5'- gCUGCCGUGggcaugggcgcgcaaCAGCGCCgcuuguucgaucagcGUGGCAGCc -3'
miRNA:   3'- -GGUGGCAUg--------------GUCGCGGaa-------------CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 26260 0.68 0.411036
Target:  5'- aCGCCaGaGCCAGCGCCacgcccGCAGCg -3'
miRNA:   3'- gGUGG-CaUGGUCGCGGaacac-CGUCG- -5'
23030 5' -56.5 NC_005178.1 + 25493 0.67 0.484798
Target:  5'- cCCGCUGUugCAGggaggcggcgaccauCGCCUUGauccgGGCcGCc -3'
miRNA:   3'- -GGUGGCAugGUC---------------GCGGAACa----CCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 24578 0.66 0.544567
Target:  5'- -aGCCGgaUACCGGCGaCCUg--GGCcGCu -3'
miRNA:   3'- ggUGGC--AUGGUCGC-GGAacaCCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 24073 0.73 0.202019
Target:  5'- gCugCGUACCAGgGCUUUcUGGCcGCu -3'
miRNA:   3'- gGugGCAUGGUCgCGGAAcACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 23561 0.67 0.460145
Target:  5'- cCCAgCCGgu-CAGUGCCUUGa-GCAGCc -3'
miRNA:   3'- -GGU-GGCaugGUCGCGGAACacCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 22995 0.67 0.460145
Target:  5'- gCACCuggGCCAGCGgCagcUGGUAGCg -3'
miRNA:   3'- gGUGGca-UGGUCGCgGaacACCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.