miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23031 5' -62.5 NC_005178.1 + 32895 0.66 0.265806
Target:  5'- cAUCAGCgGCUGGGUGaucuccagcGGCGuggucGCCGGCa -3'
miRNA:   3'- -UAGUCGgUGGUCCGC---------CCGUc----UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 11018 0.66 0.265806
Target:  5'- uGUCGGUgACgCGGG-GGGCAGGa-GGCg -3'
miRNA:   3'- -UAGUCGgUG-GUCCgCCCGUCUggCCG- -5'
23031 5' -62.5 NC_005178.1 + 12289 0.66 0.265806
Target:  5'- uGUCGGCCcgcuugGCCAGGCGcuGGaaaAGAgCCGcGCu -3'
miRNA:   3'- -UAGUCGG------UGGUCCGC--CCg--UCU-GGC-CG- -5'
23031 5' -62.5 NC_005178.1 + 15106 0.66 0.265806
Target:  5'- cUCGGCCA--AGGCGGGCuGuCCaGUa -3'
miRNA:   3'- uAGUCGGUggUCCGCCCGuCuGGcCG- -5'
23031 5' -62.5 NC_005178.1 + 3515 0.66 0.265134
Target:  5'- -cCA-CCACCAGGgccgacuCGGcCAGGCCGGUg -3'
miRNA:   3'- uaGUcGGUGGUCC-------GCCcGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 26191 0.66 0.259143
Target:  5'- --uGGCCGCUgcGGGCGuGGC--GCUGGCu -3'
miRNA:   3'- uagUCGGUGG--UCCGC-CCGucUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 28565 0.66 0.252616
Target:  5'- ---cGCCACC-GG-GGGCGucGCCGGCa -3'
miRNA:   3'- uaguCGGUGGuCCgCCCGUc-UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 24120 0.66 0.239969
Target:  5'- gGUC-GUgACCAaggcGGCGGGCuccguGACgGGCg -3'
miRNA:   3'- -UAGuCGgUGGU----CCGCCCGu----CUGgCCG- -5'
23031 5' -62.5 NC_005178.1 + 32393 0.66 0.239969
Target:  5'- -aCAGCCGCgAaagcucgcuugcGGaUGGGCAG-CCGGUg -3'
miRNA:   3'- uaGUCGGUGgU------------CC-GCCCGUCuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 23606 0.66 0.239969
Target:  5'- --aAGCCugCGGGCu-GCGGGCCaGCg -3'
miRNA:   3'- uagUCGGugGUCCGccCGUCUGGcCG- -5'
23031 5' -62.5 NC_005178.1 + 2876 0.66 0.239969
Target:  5'- -gCAGCacccCCuGGCGGGCA--UCGGCg -3'
miRNA:   3'- uaGUCGgu--GGuCCGCCCGUcuGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 7798 0.66 0.233846
Target:  5'- --aGGaCCGCCAGGCGcuucuucaGGUcuucGGCCGGCu -3'
miRNA:   3'- uagUC-GGUGGUCCGC--------CCGu---CUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 1515 0.66 0.233846
Target:  5'- -gCGGCguaguugcacuCACCAGGUauaGcGCGGGCCGGCu -3'
miRNA:   3'- uaGUCG-----------GUGGUCCGc--C-CGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 17632 0.67 0.216263
Target:  5'- -aCGGUCGaguCCAGcGCcGGCaAGACCGGCc -3'
miRNA:   3'- uaGUCGGU---GGUC-CGcCCG-UCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 23540 0.67 0.216263
Target:  5'- -gCAGCCgGCCGaGCa-GCGGGCCGGCu -3'
miRNA:   3'- uaGUCGG-UGGUcCGccCGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 17708 0.67 0.216263
Target:  5'- -aCGGUCACCuGGCcGGUcuuGCCGGCg -3'
miRNA:   3'- uaGUCGGUGGuCCGcCCGuc-UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 11757 0.67 0.215696
Target:  5'- -aCGGCCguggcccgaGCCAuGGgGGuuccgccGCAGGCCGGCc -3'
miRNA:   3'- uaGUCGG---------UGGU-CCgCC-------CGUCUGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 36110 0.67 0.210658
Target:  5'- -aCAuGCCGcCCAGGuUGGGCuGGCgGGUg -3'
miRNA:   3'- uaGU-CGGU-GGUCC-GCCCGuCUGgCCG- -5'
23031 5' -62.5 NC_005178.1 + 20997 0.67 0.210104
Target:  5'- ---cGCUACCGGGUucgccguGGGCGGcagcaccgccACCGGCc -3'
miRNA:   3'- uaguCGGUGGUCCG-------CCCGUC----------UGGCCG- -5'
23031 5' -62.5 NC_005178.1 + 31679 0.67 0.205179
Target:  5'- --gAGCCAguuccCCAGGUggccuggacgGGGCGGACCaGGUc -3'
miRNA:   3'- uagUCGGU-----GGUCCG----------CCCGUCUGG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.