Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 23034 | 3' | -58.1 | NC_005178.1 | + | 8755 | 0.72 | 0.197058 |
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Target: 5'- uGCCGugGGCGaCUUgGCCAGCgugCGGgcgGCg -3' miRNA: 3'- cCGGC--UCGC-GAAgUGGUCGa--GCCa--CG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 3032 | 0.72 | 0.176796 |
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Target: 5'- aGGCCGAGCGUggCGCCc---UGGUGCc -3' miRNA: 3'- -CCGGCUCGCGaaGUGGucgaGCCACG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 22694 | 0.75 | 0.110026 |
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Target: 5'- aGGCCGAGCuGgaUCGCCGGgUCGcUGCc -3' miRNA: 3'- -CCGGCUCG-CgaAGUGGUCgAGCcACG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 9486 | 0.75 | 0.110026 |
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Target: 5'- aGGCCgGGGCgGUUUCGCuCAGUggaCGGUGCg -3' miRNA: 3'- -CCGG-CUCG-CGAAGUG-GUCGa--GCCACG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 14066 | 0.76 | 0.092701 |
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Target: 5'- uGGCCGuccgGGUGgUcCACCAGCUCGG-GCa -3' miRNA: 3'- -CCGGC----UCGCgAaGUGGUCGAGCCaCG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 20485 | 0.78 | 0.069444 |
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Target: 5'- aGGCCGAGgGUUUCGCgCAGCUUGGccagGUu -3' miRNA: 3'- -CCGGCUCgCGAAGUG-GUCGAGCCa---CG- -5' |
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| 23034 | 3' | -58.1 | NC_005178.1 | + | 15150 | 1.14 | 0.000145 |
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Target: 5'- uGGCCGAGCGCUUCACCAGCUCGGUGCg -3' miRNA: 3'- -CCGGCUCGCGAAGUGGUCGAGCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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