Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 20581 | 0.66 | 0.447475 |
Target: 5'- --aCGGGCGCccacUUCGCCGGgUCGGgGUu -3' miRNA: 3'- ccgGCUCGCG----AAGUGGUCgAGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9723 | 0.66 | 0.456414 |
Target: 5'- cGGCCGgcucGGCGaagcCACCGGCcgcgcagaucagaUCGaGUGCa -3' miRNA: 3'- -CCGGC----UCGCgaa-GUGGUCG-------------AGC-CACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 28474 | 0.66 | 0.457413 |
Target: 5'- aGGCCG-GUauGCUgUCGCUGG-UCGGUGUg -3' miRNA: 3'- -CCGGCuCG--CGA-AGUGGUCgAGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16891 | 0.66 | 0.457413 |
Target: 5'- aGGCCGAGCuGCUcggCGCCcuGGC-CGaG-GCa -3' miRNA: 3'- -CCGGCUCG-CGAa--GUGG--UCGaGC-CaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 13185 | 0.66 | 0.467467 |
Target: 5'- uGGCCaGGCGCUggagCACCuccauagCGGUGg -3' miRNA: 3'- -CCGGcUCGCGAa---GUGGucga---GCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16070 | 0.66 | 0.467467 |
Target: 5'- -cCCGAGCGCga-ACgCGGCUU-GUGCa -3' miRNA: 3'- ccGGCUCGCGaagUG-GUCGAGcCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 27513 | 0.66 | 0.477634 |
Target: 5'- aGGCUGAuGCGCUggGCC-GCcgUGGUGg -3' miRNA: 3'- -CCGGCU-CGCGAagUGGuCGa-GCCACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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