miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 3' -62.4 NC_005178.1 + 3916 0.66 0.286326
Target:  5'- cGAUG-CgCGGCaaGCUGCUgugCGGCCGg -3'
miRNA:   3'- -CUACuG-GCCGcgCGGCGGaa-GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 9661 0.66 0.286326
Target:  5'- --cGGCCGGUG-GCuuCGCCgagcCGGCCGa -3'
miRNA:   3'- cuaCUGGCCGCgCG--GCGGaa--GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 27142 0.66 0.286326
Target:  5'- --cGGCCGGaaaauauCGCCGCCgcucgcaaGGCCAu -3'
miRNA:   3'- cuaCUGGCCgc-----GCGGCGGaag-----CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 30136 0.66 0.279299
Target:  5'- uGAUGAUCGGCucccucaacaaGCGUgGCg-UCGGCUAu -3'
miRNA:   3'- -CUACUGGCCG-----------CGCGgCGgaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12935 0.66 0.27241
Target:  5'- --gGACgUGGCGCGCCagguGCUggcCGGCCu -3'
miRNA:   3'- cuaCUG-GCCGCGCGG----CGGaa-GCCGGu -5'
23044 3' -62.4 NC_005178.1 + 22325 0.66 0.265658
Target:  5'- --cGcCUGGCGgGCCaGCCUggCGGUCGg -3'
miRNA:   3'- cuaCuGGCCGCgCGG-CGGAa-GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 30364 0.66 0.265658
Target:  5'- ----cCCGGCGCGUCGUCggcccCGGUCGc -3'
miRNA:   3'- cuacuGGCCGCGCGGCGGaa---GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 21012 0.66 0.265658
Target:  5'- cGUGGgCGGCaGCaCCGCCacCGGCCu -3'
miRNA:   3'- cUACUgGCCG-CGcGGCGGaaGCCGGu -5'
23044 3' -62.4 NC_005178.1 + 10941 0.66 0.265658
Target:  5'- --cGAuCCGGCGCGgcCCGCCUcCuGCCc -3'
miRNA:   3'- cuaCU-GGCCGCGC--GGCGGAaGcCGGu -5'
23044 3' -62.4 NC_005178.1 + 24173 0.66 0.265658
Target:  5'- uGGUGGCUGGCGaugugauCCGCU--UGGCCAa -3'
miRNA:   3'- -CUACUGGCCGCgc-----GGCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12172 0.66 0.265658
Target:  5'- --aGG-CGGCGCGCC-Ca-UCGGCCAg -3'
miRNA:   3'- cuaCUgGCCGCGCGGcGgaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 5295 0.66 0.259043
Target:  5'- --gGGCCGGCGCGa-GCUggaacUGGCCGa -3'
miRNA:   3'- cuaCUGGCCGCGCggCGGaa---GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 16201 0.66 0.259043
Target:  5'- cGGUGACCGGCcucgGCcauGCCGCag-CGGgCAu -3'
miRNA:   3'- -CUACUGGCCG----CG---CGGCGgaaGCCgGU- -5'
23044 3' -62.4 NC_005178.1 + 9521 0.66 0.252562
Target:  5'- --aGACCGccaGCGCCGCCUggcgCGggaacGCCAa -3'
miRNA:   3'- cuaCUGGCcg-CGCGGCGGAa---GC-----CGGU- -5'
23044 3' -62.4 NC_005178.1 + 10636 0.66 0.246216
Target:  5'- ---aGCCGGgGCGCaaCGCCc-CGGCCGg -3'
miRNA:   3'- cuacUGGCCgCGCG--GCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 31400 0.66 0.246216
Target:  5'- -uUGGCUGGgGCGCgCGCgUUUGGgCGc -3'
miRNA:   3'- cuACUGGCCgCGCG-GCGgAAGCCgGU- -5'
23044 3' -62.4 NC_005178.1 + 28204 0.66 0.246216
Target:  5'- --cGACCGucagccccuGgGCGCCGCCaUCGGUg- -3'
miRNA:   3'- cuaCUGGC---------CgCGCGGCGGaAGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 17406 0.67 0.231523
Target:  5'- ---aGCCGGCGCggGCUGCCgagcugggcgaccUCGGCCc -3'
miRNA:   3'- cuacUGGCCGCG--CGGCGGa------------AGCCGGu -5'
23044 3' -62.4 NC_005178.1 + 28133 0.67 0.227967
Target:  5'- ---aGCUGGCGgGUCGCCaUCcuGGCCAg -3'
miRNA:   3'- cuacUGGCCGCgCGGCGGaAG--CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 2905 0.67 0.227967
Target:  5'- --gGACaUGGCGCGCCucgGCCaggUCGaGCCGc -3'
miRNA:   3'- cuaCUG-GCCGCGCGG---CGGa--AGC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.