Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23044 | 5' | -57.1 | NC_005178.1 | + | 24116 | 0.66 | 0.492383 |
Target: 5'- ---uGUGCAGGGUgauguuGACGGUggCGGUcuUGCc -3' miRNA: 3'- auauCGCGUCCCG------UUGCCA--GCCG--ACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 12904 | 0.66 | 0.492383 |
Target: 5'- --cGGCGCAGuugcuGGcCggUGGUgGGCUGg -3' miRNA: 3'- auaUCGCGUC-----CC-GuuGCCAgCCGACg -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 19497 | 0.66 | 0.486042 |
Target: 5'- aAUAGCGCaucacccugucaccgAGGccgaGCAGC--UCGGCUGCg -3' miRNA: 3'- aUAUCGCG---------------UCC----CGUUGccAGCCGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 23463 | 0.66 | 0.486042 |
Target: 5'- --gGGCGCccGGcGCGAagccggcccgcugcuCGGcCGGCUGCu -3' miRNA: 3'- auaUCGCGu-CC-CGUU---------------GCCaGCCGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 1493 | 0.66 | 0.481836 |
Target: 5'- gUAUAGCGC-GGGC------CGGCUGCg -3' miRNA: 3'- -AUAUCGCGuCCCGuugccaGCCGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 1979 | 0.66 | 0.47974 |
Target: 5'- cGUGGCGCGGGaaccgcuGCAGCagaGGUCgcggccuGGCUGa -3' miRNA: 3'- aUAUCGCGUCC-------CGUUG---CCAG-------CCGACg -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 37250 | 0.66 | 0.468292 |
Target: 5'- gAUGGCGUcaaacucggccuccAGGcGCAGCgGGUCGGacucggUGCg -3' miRNA: 3'- aUAUCGCG--------------UCC-CGUUG-CCAGCCg-----ACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 36904 | 0.66 | 0.46108 |
Target: 5'- -cUAG-GCGGGGUuGCGGcuaUGGCUGUc -3' miRNA: 3'- auAUCgCGUCCCGuUGCCa--GCCGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 20445 | 0.66 | 0.46108 |
Target: 5'- --gGGCGUccAGGGCcggcuucagGGCGGUCagGGCcGCa -3' miRNA: 3'- auaUCGCG--UCCCG---------UUGCCAG--CCGaCG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 15336 | 0.66 | 0.45088 |
Target: 5'- ---uGUGCAGGGCGuCGGggccaucgucgUGGuCUGCg -3' miRNA: 3'- auauCGCGUCCCGUuGCCa----------GCC-GACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 33830 | 0.66 | 0.45088 |
Target: 5'- gGUGGUGacaAGGGCGAaGGUgGGCUc- -3' miRNA: 3'- aUAUCGCg--UCCCGUUgCCAgCCGAcg -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 2955 | 0.66 | 0.44482 |
Target: 5'- --aGGCGCgccauguccagcaucAGGGUAAUGGagcguuucCGGCUGUa -3' miRNA: 3'- auaUCGCG---------------UCCCGUUGCCa-------GCCGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 11212 | 0.66 | 0.440805 |
Target: 5'- --aAGCcCAGGGCGGCGGcCagGGCgcccGCg -3' miRNA: 3'- auaUCGcGUCCCGUUGCCaG--CCGa---CG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 19812 | 0.67 | 0.421047 |
Target: 5'- cAUGcCGCcauGGuGGCGACGGUCGaGCgcgGCg -3' miRNA: 3'- aUAUcGCG---UC-CCGUUGCCAGC-CGa--CG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 30270 | 0.67 | 0.421047 |
Target: 5'- --cGGUaCAGcGGCGGCGGcagCGuGCUGCg -3' miRNA: 3'- auaUCGcGUC-CCGUUGCCa--GC-CGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 32634 | 0.67 | 0.421047 |
Target: 5'- --cGGUGCGGugauGCGAacUGGUCGGaCUGCg -3' miRNA: 3'- auaUCGCGUCc---CGUU--GCCAGCC-GACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 30563 | 0.67 | 0.401832 |
Target: 5'- ---cGCGCcuGGCGAuccguuggUGGUCGGCaGCg -3' miRNA: 3'- auauCGCGucCCGUU--------GCCAGCCGaCG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 26160 | 0.67 | 0.398057 |
Target: 5'- gGUAGCGCcuuuaucaucaucGGcGCGGCGGUgGccGCUGCg -3' miRNA: 3'- aUAUCGCGu------------CC-CGUUGCCAgC--CGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 33370 | 0.67 | 0.396177 |
Target: 5'- --cAGCGCGGGaaAucgaugucuucaaagGCGGUCGGCUuggGCu -3' miRNA: 3'- auaUCGCGUCCcgU---------------UGCCAGCCGA---CG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 25319 | 0.67 | 0.386868 |
Target: 5'- ---uGCGCAGGGCuaauacaaggucuUGGUCGGCc-- -3' miRNA: 3'- auauCGCGUCCCGuu-----------GCCAGCCGacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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