miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 5' -57.1 NC_005178.1 + 24116 0.66 0.492383
Target:  5'- ---uGUGCAGGGUgauguuGACGGUggCGGUcuUGCc -3'
miRNA:   3'- auauCGCGUCCCG------UUGCCA--GCCG--ACG- -5'
23044 5' -57.1 NC_005178.1 + 12904 0.66 0.492383
Target:  5'- --cGGCGCAGuugcuGGcCggUGGUgGGCUGg -3'
miRNA:   3'- auaUCGCGUC-----CC-GuuGCCAgCCGACg -5'
23044 5' -57.1 NC_005178.1 + 19497 0.66 0.486042
Target:  5'- aAUAGCGCaucacccugucaccgAGGccgaGCAGC--UCGGCUGCg -3'
miRNA:   3'- aUAUCGCG---------------UCC----CGUUGccAGCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 23463 0.66 0.486042
Target:  5'- --gGGCGCccGGcGCGAagccggcccgcugcuCGGcCGGCUGCu -3'
miRNA:   3'- auaUCGCGu-CC-CGUU---------------GCCaGCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 1493 0.66 0.481836
Target:  5'- gUAUAGCGC-GGGC------CGGCUGCg -3'
miRNA:   3'- -AUAUCGCGuCCCGuugccaGCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 1979 0.66 0.47974
Target:  5'- cGUGGCGCGGGaaccgcuGCAGCagaGGUCgcggccuGGCUGa -3'
miRNA:   3'- aUAUCGCGUCC-------CGUUG---CCAG-------CCGACg -5'
23044 5' -57.1 NC_005178.1 + 37250 0.66 0.468292
Target:  5'- gAUGGCGUcaaacucggccuccAGGcGCAGCgGGUCGGacucggUGCg -3'
miRNA:   3'- aUAUCGCG--------------UCC-CGUUG-CCAGCCg-----ACG- -5'
23044 5' -57.1 NC_005178.1 + 36904 0.66 0.46108
Target:  5'- -cUAG-GCGGGGUuGCGGcuaUGGCUGUc -3'
miRNA:   3'- auAUCgCGUCCCGuUGCCa--GCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 20445 0.66 0.46108
Target:  5'- --gGGCGUccAGGGCcggcuucagGGCGGUCagGGCcGCa -3'
miRNA:   3'- auaUCGCG--UCCCG---------UUGCCAG--CCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 15336 0.66 0.45088
Target:  5'- ---uGUGCAGGGCGuCGGggccaucgucgUGGuCUGCg -3'
miRNA:   3'- auauCGCGUCCCGUuGCCa----------GCC-GACG- -5'
23044 5' -57.1 NC_005178.1 + 33830 0.66 0.45088
Target:  5'- gGUGGUGacaAGGGCGAaGGUgGGCUc- -3'
miRNA:   3'- aUAUCGCg--UCCCGUUgCCAgCCGAcg -5'
23044 5' -57.1 NC_005178.1 + 2955 0.66 0.44482
Target:  5'- --aGGCGCgccauguccagcaucAGGGUAAUGGagcguuucCGGCUGUa -3'
miRNA:   3'- auaUCGCG---------------UCCCGUUGCCa-------GCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 11212 0.66 0.440805
Target:  5'- --aAGCcCAGGGCGGCGGcCagGGCgcccGCg -3'
miRNA:   3'- auaUCGcGUCCCGUUGCCaG--CCGa---CG- -5'
23044 5' -57.1 NC_005178.1 + 19812 0.67 0.421047
Target:  5'- cAUGcCGCcauGGuGGCGACGGUCGaGCgcgGCg -3'
miRNA:   3'- aUAUcGCG---UC-CCGUUGCCAGC-CGa--CG- -5'
23044 5' -57.1 NC_005178.1 + 30270 0.67 0.421047
Target:  5'- --cGGUaCAGcGGCGGCGGcagCGuGCUGCg -3'
miRNA:   3'- auaUCGcGUC-CCGUUGCCa--GC-CGACG- -5'
23044 5' -57.1 NC_005178.1 + 32634 0.67 0.421047
Target:  5'- --cGGUGCGGugauGCGAacUGGUCGGaCUGCg -3'
miRNA:   3'- auaUCGCGUCc---CGUU--GCCAGCC-GACG- -5'
23044 5' -57.1 NC_005178.1 + 30563 0.67 0.401832
Target:  5'- ---cGCGCcuGGCGAuccguuggUGGUCGGCaGCg -3'
miRNA:   3'- auauCGCGucCCGUU--------GCCAGCCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 26160 0.67 0.398057
Target:  5'- gGUAGCGCcuuuaucaucaucGGcGCGGCGGUgGccGCUGCg -3'
miRNA:   3'- aUAUCGCGu------------CC-CGUUGCCAgC--CGACG- -5'
23044 5' -57.1 NC_005178.1 + 33370 0.67 0.396177
Target:  5'- --cAGCGCGGGaaAucgaugucuucaaagGCGGUCGGCUuggGCu -3'
miRNA:   3'- auaUCGCGUCCcgU---------------UGCCAGCCGA---CG- -5'
23044 5' -57.1 NC_005178.1 + 25319 0.67 0.386868
Target:  5'- ---uGCGCAGGGCuaauacaaggucuUGGUCGGCc-- -3'
miRNA:   3'- auauCGCGUCCCGuu-----------GCCAGCCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.