miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23049 5' -58.2 NC_005178.1 + 37262 0.67 0.351699
Target:  5'- --uGUGCCGGUa---GCgAUGGCGUCa -3'
miRNA:   3'- cuuUACGGCCGgugcCGgUACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 37048 0.67 0.38717
Target:  5'- aGAGuggGCCGGCUcgcuggacgagGCGGCagcacucgcUGGCGUCc -3'
miRNA:   3'- -CUUua-CGGCCGG-----------UGCCGgu-------ACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 35866 0.72 0.16379
Target:  5'- ----aGCCGGaaaCCGaGGCCGUGGCGUUc -3'
miRNA:   3'- cuuuaCGGCC---GGUgCCGGUACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 35701 0.66 0.405767
Target:  5'- ----cGCUGGCCGaGGaCAUGGCGg- -3'
miRNA:   3'- cuuuaCGGCCGGUgCCgGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 34738 0.66 0.415274
Target:  5'- gGAAcgGCUGGCCAggguucaGGCUAcgGGCG-Cg -3'
miRNA:   3'- -CUUuaCGGCCGGUg------CCGGUa-CCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 33617 0.68 0.326647
Target:  5'- -cGAUGCCGuccuggagaaaaGCCAUccaauuuaGGCCAUGGCGc- -3'
miRNA:   3'- cuUUACGGC------------CGGUG--------CCGGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 32295 0.67 0.377184
Target:  5'- ----gGUCGGCUcgaccagGCGGCCcagggcGGCGUCg -3'
miRNA:   3'- cuuuaCGGCCGG-------UGCCGGua----CCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 31915 0.67 0.360347
Target:  5'- ---cUGCCGGUCAuCGGCCAUcgcugaucGGCa-- -3'
miRNA:   3'- cuuuACGGCCGGU-GCCGGUA--------CCGcag -5'
23049 5' -58.2 NC_005178.1 + 31500 0.66 0.409554
Target:  5'- ----gGCCGGCCucgacuuccgcgacgGCGGUC-UGGCGa- -3'
miRNA:   3'- cuuuaCGGCCGG---------------UGCCGGuACCGCag -5'
23049 5' -58.2 NC_005178.1 + 28991 0.71 0.198663
Target:  5'- --cGUGCCGGaCGCGGggAUGGUGUCg -3'
miRNA:   3'- cuuUACGGCCgGUGCCggUACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 28771 0.66 0.434692
Target:  5'- ---uUGCCGGCCcacauguCGGCCGccaucUGGUcgggGUCu -3'
miRNA:   3'- cuuuACGGCCGGu------GCCGGU-----ACCG----CAG- -5'
23049 5' -58.2 NC_005178.1 + 28629 0.71 0.188086
Target:  5'- gGGAAUGCCGGCgACGcCCccgGUGGCG-Cg -3'
miRNA:   3'- -CUUUACGGCCGgUGCcGG---UACCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 28261 0.75 0.101002
Target:  5'- ----cGCUGGCCGCcGCCaAUGGUGUCa -3'
miRNA:   3'- cuuuaCGGCCGGUGcCGG-UACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 26113 0.68 0.310694
Target:  5'- ----cGUCGGCCaacaacgccaagACGGCUAUGGUGg- -3'
miRNA:   3'- cuuuaCGGCCGG------------UGCCGGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 25941 0.67 0.360347
Target:  5'- ----cGCCGGCaacugccgCAUGGCC-UGGCGg- -3'
miRNA:   3'- cuuuaCGGCCG--------GUGCCGGuACCGCag -5'
23049 5' -58.2 NC_005178.1 + 25902 1.1 0.000224
Target:  5'- cGAAAUGCCGGCCACGGCCAUGGCGUCa -3'
miRNA:   3'- -CUUUACGGCCGGUGCCGGUACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 25698 0.66 0.405767
Target:  5'- ---cUGCCGGUCGaacuCGGCgGUGGCu-- -3'
miRNA:   3'- cuuuACGGCCGGU----GCCGgUACCGcag -5'
23049 5' -58.2 NC_005178.1 + 24386 0.68 0.302942
Target:  5'- uGAAcgGCUgGGUCGgGGCC--GGCGUCg -3'
miRNA:   3'- -CUUuaCGG-CCGGUgCCGGuaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 23511 0.69 0.27272
Target:  5'- ----cGCCGGgCGCccuGGCCGUcgcccugGGCGUCg -3'
miRNA:   3'- cuuuaCGGCCgGUG---CCGGUA-------CCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 23445 0.67 0.378084
Target:  5'- ----cGCCcagGGCgACGGCCAgGGCGcCc -3'
miRNA:   3'- cuuuaCGG---CCGgUGCCGGUaCCGCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.