miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 26163 0.72 0.076155
Target:  5'- aGCGCCuuuaucaucaucgGCG-CgGCGGUGGCCGCUGCg -3'
miRNA:   3'- -CGCGG-------------UGCgGgCGUCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 4932 0.72 0.076365
Target:  5'- uCGCCGaggaacUGgCCGcCAGCGGCCGCCcGCUg -3'
miRNA:   3'- cGCGGU------GCgGGC-GUCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 5248 0.7 0.108973
Target:  5'- cGCGUCGCGguuaaCCUggaGCAGuUGGCCgagGCCGCCa -3'
miRNA:   3'- -CGCGGUGC-----GGG---CGUC-GCCGG---UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 20996 0.7 0.108973
Target:  5'- aCGCUACcggGUUCGCcgugGGCGGCagCACCGCCa -3'
miRNA:   3'- cGCGGUG---CGGGCG----UCGCCG--GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3131 0.69 0.111963
Target:  5'- aGCGCaGCGCCCGC-GCuGCCcaugcACUGCUg -3'
miRNA:   3'- -CGCGgUGCGGGCGuCGcCGG-----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36060 0.69 0.114719
Target:  5'- cCGCUugGCCCGCuGGUGGgcaacgggugcgaCCACgGCUa -3'
miRNA:   3'- cGCGGugCGGGCG-UCGCC-------------GGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 28532 0.69 0.115029
Target:  5'- gGCGCUACaugaCUggGCGGgGGCCGuCCGCCg -3'
miRNA:   3'- -CGCGGUGcg--GG--CGUCgCCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25153 0.69 0.115029
Target:  5'- cCGCCAgcaaGCCCGCgagcugauGGCGGUCAaccauggcuUCGCCg -3'
miRNA:   3'- cGCGGUg---CGGGCG--------UCGCCGGU---------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 1700 0.69 0.118173
Target:  5'- uGCGUgGCGgCCGC-GUGGCUuacgGCCGCg -3'
miRNA:   3'- -CGCGgUGCgGGCGuCGCCGG----UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 7106 0.69 0.124703
Target:  5'- aGUGCaGCGaguaCCUcCAGCGGCCGgCGCCg -3'
miRNA:   3'- -CGCGgUGC----GGGcGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13137 0.7 0.106058
Target:  5'- aGCGCCugGCCaGCuucauccgugAGCGGUUcCCGCa -3'
miRNA:   3'- -CGCGGugCGGgCG----------UCGCCGGuGGCGg -5'
23050 3' -65.2 NC_005178.1 + 17053 0.7 0.103217
Target:  5'- cGgGCCAUcUUCGCcauGCGGCCggagGCCGCCa -3'
miRNA:   3'- -CgCGGUGcGGGCGu--CGCCGG----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11394 0.71 0.080692
Target:  5'- cCGCCugGUggcugaUCGguGCGGcCCugCGCCu -3'
miRNA:   3'- cGCGGugCG------GGCguCGCC-GGugGCGG- -5'
23050 3' -65.2 NC_005178.1 + 23536 0.71 0.082714
Target:  5'- gGCGUCACuccgcugGCCCGCAGCccgcaGGCU-UCGCCa -3'
miRNA:   3'- -CGCGGUG-------CGGGCGUCG-----CCGGuGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 19742 0.71 0.085018
Target:  5'- cCGCCGCGCUCGaccgucgccaccaUGGCGGCaugaagaagaACCGCCu -3'
miRNA:   3'- cGCGGUGCGGGC-------------GUCGCCGg---------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6918 0.71 0.08981
Target:  5'- uCGCCGCugaggugGCCCGCAGCaGCCAgacgaaaGCCg -3'
miRNA:   3'- cGCGGUG-------CGGGCGUCGcCGGUgg-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 11144 0.71 0.090057
Target:  5'- aGCGCgGgCGCCC----UGGCCGCCGCCc -3'
miRNA:   3'- -CGCGgU-GCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 32094 0.71 0.092555
Target:  5'- -gGCUAUGCCCGUuucgcgaauGGuCGGCCggGCCGUCg -3'
miRNA:   3'- cgCGGUGCGGGCG---------UC-GCCGG--UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11752 0.7 0.095118
Target:  5'- aUGCCACGgCCGUGGCccgaGCCAuggggguuCCGCCg -3'
miRNA:   3'- cGCGGUGCgGGCGUCGc---CGGU--------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16417 0.7 0.100448
Target:  5'- uGCGCCAUGaCCUacugGCuGCGGaugcccgccagcUCGCCGCCa -3'
miRNA:   3'- -CGCGGUGC-GGG----CGuCGCC------------GGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.