miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 13885 0.66 0.210629
Target:  5'- aGCGCCGC-CCgGCGuGaacgGGCCAgCGCg -3'
miRNA:   3'- -CGCGGUGcGGgCGU-Cg---CCGGUgGCGg -5'
23050 3' -65.2 NC_005178.1 + 9359 0.66 0.195069
Target:  5'- aCGgCGCGCUCGCGGUGaGgaACCGCa -3'
miRNA:   3'- cGCgGUGCGGGCGUCGC-CggUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 30276 0.66 0.216048
Target:  5'- -aGCgGCGgCgGCAGCGuGCUGCgGCUa -3'
miRNA:   3'- cgCGgUGCgGgCGUCGC-CGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 13672 0.66 0.210629
Target:  5'- aGCGUgagCAUGCuCUGCguaaugucAGUGGCCgccuugauGCCGCCg -3'
miRNA:   3'- -CGCG---GUGCG-GGCG--------UCGCCGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16215 0.66 0.205327
Target:  5'- -gGCCAUG-CCGCAGCGGgCAuuauCC-CCg -3'
miRNA:   3'- cgCGGUGCgGGCGUCGCCgGU----GGcGG- -5'
23050 3' -65.2 NC_005178.1 + 18357 0.66 0.209026
Target:  5'- aGCGCCugG-CgGCAcucuacGCGGCUguaaccgacacccuGCCGCUg -3'
miRNA:   3'- -CGCGGugCgGgCGU------CGCCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10642 0.66 0.205327
Target:  5'- gGCGCaACGCCC-CGGcCGGCgucuCCGCg -3'
miRNA:   3'- -CGCGgUGCGGGcGUC-GCCGgu--GGCGg -5'
23050 3' -65.2 NC_005178.1 + 18451 0.66 0.216597
Target:  5'- aUGCCGCGCau-CAGCGGCagggugucgguuacaGCCGCg -3'
miRNA:   3'- cGCGGUGCGggcGUCGCCGg--------------UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 2841 0.66 0.198607
Target:  5'- aCGCC-CuagaccugaugaugGCCCGCAcCGGCUACaGCCg -3'
miRNA:   3'- cGCGGuG--------------CGGGCGUcGCCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 31911 0.66 0.195069
Target:  5'- gGCGCU--GCCgGuCAuCGGCCAUCGCUg -3'
miRNA:   3'- -CGCGGugCGGgC-GUcGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36153 0.66 0.19011
Target:  5'- -gGCCACGCCUGCuGGCcaGGUCAagaCGUa -3'
miRNA:   3'- cgCGGUGCGGGCG-UCG--CCGGUg--GCGg -5'
23050 3' -65.2 NC_005178.1 + 19904 0.66 0.188158
Target:  5'- uGUGCCGgGCUgGCGGaucgaugccgccaGuGCCGCCGCa -3'
miRNA:   3'- -CGCGGUgCGGgCGUCg------------C-CGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 3682 0.66 0.189132
Target:  5'- cGCGCCGCcaaggaacuGCCCGgcuacauCGGC-GCCgacauggACCGCCa -3'
miRNA:   3'- -CGCGGUG---------CGGGC-------GUCGcCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 24589 0.66 0.19011
Target:  5'- gGCGaCCugGgCCGCuuCGGCCGCauuauucaGCUg -3'
miRNA:   3'- -CGC-GGugCgGGCGucGCCGGUGg-------CGG- -5'
23050 3' -65.2 NC_005178.1 + 21782 0.66 0.202201
Target:  5'- aCGCCA-GCCagGCGGCGGCgaaggcagguuauggCGCUGCUc -3'
miRNA:   3'- cGCGGUgCGGg-CGUCGCCG---------------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 15462 0.66 0.19011
Target:  5'- -aGUCGcCGCCCau-GCGGCCACCuaCg -3'
miRNA:   3'- cgCGGU-GCGGGcguCGCCGGUGGcgG- -5'
23050 3' -65.2 NC_005178.1 + 12229 0.66 0.210629
Target:  5'- aGCGCCugGCCa--AGCGGgCCGacagCGaCCa -3'
miRNA:   3'- -CGCGGugCGGgcgUCGCC-GGUg---GC-GG- -5'
23050 3' -65.2 NC_005178.1 + 399 0.66 0.200141
Target:  5'- uCGCCAuCGCacaGCAGaGGCuccauagaguCACCGCCa -3'
miRNA:   3'- cGCGGU-GCGgg-CGUCgCCG----------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 1772 0.66 0.188644
Target:  5'- aGUGCauCGCGgCCGUAagccacGCGGCCGCCacgcacaucgaccaGCCa -3'
miRNA:   3'- -CGCG--GUGCgGGCGU------CGCCGGUGG--------------CGG- -5'
23050 3' -65.2 NC_005178.1 + 5543 0.66 0.205327
Target:  5'- cUGCCuGCGCCUG-GGCGGCUA-CGUCg -3'
miRNA:   3'- cGCGG-UGCGGGCgUCGCCGGUgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.