miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 18357 0.66 0.209026
Target:  5'- aGCGCCugG-CgGCAcucuacGCGGCUguaaccgacacccuGCCGCUg -3'
miRNA:   3'- -CGCGGugCgGgCGU------CGCCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16215 0.66 0.205327
Target:  5'- -gGCCAUG-CCGCAGCGGgCAuuauCC-CCg -3'
miRNA:   3'- cgCGGUGCgGGCGUCGCCgGU----GGcGG- -5'
23050 3' -65.2 NC_005178.1 + 21782 0.66 0.202201
Target:  5'- aCGCCA-GCCagGCGGCGGCgaaggcagguuauggCGCUGCUc -3'
miRNA:   3'- cGCGGUgCGGg-CGUCGCCG---------------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 399 0.66 0.200141
Target:  5'- uCGCCAuCGCacaGCAGaGGCuccauagaguCACCGCCa -3'
miRNA:   3'- cGCGGU-GCGgg-CGUCgCCG----------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13885 0.66 0.210629
Target:  5'- aGCGCCGC-CCgGCGuGaacgGGCCAgCGCg -3'
miRNA:   3'- -CGCGGUGcGGgCGU-Cg---CCGGUgGCGg -5'
23050 3' -65.2 NC_005178.1 + 13672 0.66 0.210629
Target:  5'- aGCGUgagCAUGCuCUGCguaaugucAGUGGCCgccuugauGCCGCCg -3'
miRNA:   3'- -CGCG---GUGCG-GGCG--------UCGCCGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 17112 0.66 0.195069
Target:  5'- -gGCCGCauggcgaagaugGCCCGCAGauCGGCCucgguuggcGuuGCCa -3'
miRNA:   3'- cgCGGUG------------CGGGCGUC--GCCGG---------UggCGG- -5'
23050 3' -65.2 NC_005178.1 + 18245 0.66 0.210629
Target:  5'- aCGCCAC-CgCGCAGCcGa-ACCGCCa -3'
miRNA:   3'- cGCGGUGcGgGCGUCGcCggUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 2841 0.66 0.198607
Target:  5'- aCGCC-CuagaccugaugaugGCCCGCAcCGGCUACaGCCg -3'
miRNA:   3'- cGCGGuG--------------CGGGCGUcGCCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 1772 0.66 0.188644
Target:  5'- aGUGCauCGCGgCCGUAagccacGCGGCCGCCacgcacaucgaccaGCCa -3'
miRNA:   3'- -CGCG--GUGCgGGCGU------CGCCGGUGG--------------CGG- -5'
23050 3' -65.2 NC_005178.1 + 5543 0.66 0.205327
Target:  5'- cUGCCuGCGCCUG-GGCGGCUA-CGUCg -3'
miRNA:   3'- cGCGG-UGCGGGCgUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10642 0.66 0.205327
Target:  5'- gGCGCaACGCCC-CGGcCGGCgucuCCGCg -3'
miRNA:   3'- -CGCGgUGCGGGcGUC-GCCGgu--GGCGg -5'
23050 3' -65.2 NC_005178.1 + 24198 0.66 0.216048
Target:  5'- aGUaCCuCGCCCGUcaCGGagcCCGCCGCCu -3'
miRNA:   3'- -CGcGGuGCGGGCGucGCC---GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5633 0.67 0.16263
Target:  5'- uCGCCGCGCuugaauCCGCGGaucGCCucgacguaGCCGCCc -3'
miRNA:   3'- cGCGGUGCG------GGCGUCgc-CGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25458 0.67 0.158413
Target:  5'- aGCGCUggacGCGCUgGCGGaaaguucggauCGGaugaaCACCGCCa -3'
miRNA:   3'- -CGCGG----UGCGGgCGUC-----------GCCg----GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 24319 0.67 0.170032
Target:  5'- cUGCCgACGCcggccccgacccagCCGUucaaAGCGGCCuaugaguacGCCGCCa -3'
miRNA:   3'- cGCGG-UGCG--------------GGCG----UCGCCGG---------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25574 0.67 0.166948
Target:  5'- aCGCCgagcGCGCCCGCgaacAGCaGGUUGCaGCCg -3'
miRNA:   3'- cGCGG----UGCGGGCG----UCG-CCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 31049 0.67 0.16263
Target:  5'- cGCuGUCugGCCa--GGCGucGCCGCCGCUg -3'
miRNA:   3'- -CG-CGGugCGGgcgUCGC--CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 23513 0.67 0.16263
Target:  5'- cGCGCCggGCGCCC----UGGCCGUCGCCc -3'
miRNA:   3'- -CGCGG--UGCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6392 0.67 0.170922
Target:  5'- gGCGUCuGCGCUcgauuguCGCGGCgaGGCgCGCCGCg -3'
miRNA:   3'- -CGCGG-UGCGG-------GCGUCG--CCG-GUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.