miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 3868 0.73 0.057871
Target:  5'- uUGCCGCGCaucguugacCCGaacacCGGCCGCCGCCg -3'
miRNA:   3'- cGCGGUGCG---------GGCguc--GCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5342 0.73 0.059505
Target:  5'- cGCGCCG-GCCCugaacgGUGGCGGCCuCgGCCa -3'
miRNA:   3'- -CGCGGUgCGGG------CGUCGCCGGuGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 17666 0.73 0.062909
Target:  5'- -aGaCCACGgCgaCGcCAGCGGCCGCCGUCa -3'
miRNA:   3'- cgC-GGUGCgG--GC-GUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6695 0.73 0.064681
Target:  5'- aGCGCCugGaCCG-GGCGGCCucACUGCUg -3'
miRNA:   3'- -CGCGGugCgGGCgUCGCCGG--UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3758 0.72 0.066501
Target:  5'- cGCGCCGgGCCauCGCcaagGGCGGCaccauGCCGCUg -3'
miRNA:   3'- -CGCGGUgCGG--GCG----UCGCCGg----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 8876 0.72 0.067243
Target:  5'- cGCGCCGggcgacuuucuugcCGaCCUGguGCGGCUcagcgguugcaaagACCGCCg -3'
miRNA:   3'- -CGCGGU--------------GC-GGGCguCGCCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13088 0.72 0.06837
Target:  5'- cGCGUUcUGCCCGaaacauCAGCgcuGGCCACCGCUa -3'
miRNA:   3'- -CGCGGuGCGGGC------GUCG---CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31434 0.72 0.06837
Target:  5'- aGCGUCAUGUCCaGUAGCuGCCGCuCGCg -3'
miRNA:   3'- -CGCGGUGCGGG-CGUCGcCGGUG-GCGg -5'
23050 3' -65.2 NC_005178.1 + 28620 0.72 0.06837
Target:  5'- -gGCgACGCCCccgguggcgcgGCGGaCGGCCcCCGCCc -3'
miRNA:   3'- cgCGgUGCGGG-----------CGUC-GCCGGuGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25841 0.72 0.071072
Target:  5'- aCGCCAUGgCCGUGGcCGGCauuucggcaggucagUACCGCCa -3'
miRNA:   3'- cGCGGUGCgGGCGUC-GCCG---------------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 29571 0.72 0.074286
Target:  5'- aGUGUCACugcuGCCCGCAuauCGGCCGCaGCCc -3'
miRNA:   3'- -CGCGGUG----CGGGCGUc--GCCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 5166 0.72 0.074286
Target:  5'- gGCGCCGgucuacaGcCCCGgAGUGGCUAUCGCUg -3'
miRNA:   3'- -CGCGGUg------C-GGGCgUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16764 0.72 0.075736
Target:  5'- gGCGCCGgcucaguugggcgaUGCCUGCGcCGGCCugaucgcccaggACCGCCu -3'
miRNA:   3'- -CGCGGU--------------GCGGGCGUcGCCGG------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 26163 0.72 0.076155
Target:  5'- aGCGCCuuuaucaucaucgGCG-CgGCGGUGGCCGCUGCg -3'
miRNA:   3'- -CGCGG-------------UGCgGgCGUCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 4932 0.72 0.076365
Target:  5'- uCGCCGaggaacUGgCCGcCAGCGGCCGCCcGCUg -3'
miRNA:   3'- cGCGGU------GCgGGC-GUCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 10506 0.71 0.0785
Target:  5'- cGCGCCaccguaccaGCGCCUugugGCAGCGaGCCACguaaauuucuuCGCCc -3'
miRNA:   3'- -CGCGG---------UGCGGG----CGUCGC-CGGUG-----------GCGG- -5'
23050 3' -65.2 NC_005178.1 + 29443 0.71 0.080692
Target:  5'- aGCaGCUGCGCUCGUAGgGGCUGCUgauGCCc -3'
miRNA:   3'- -CG-CGGUGCGGGCGUCgCCGGUGG---CGG- -5'
23050 3' -65.2 NC_005178.1 + 22254 0.71 0.080692
Target:  5'- uGCGCCAgUGCCgGUGGagccauaGGCCAgCUGCCa -3'
miRNA:   3'- -CGCGGU-GCGGgCGUCg------CCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11394 0.71 0.080692
Target:  5'- cCGCCugGUggcugaUCGguGCGGcCCugCGCCu -3'
miRNA:   3'- cGCGGugCG------GGCguCGCC-GGugGCGG- -5'
23050 3' -65.2 NC_005178.1 + 23536 0.71 0.082714
Target:  5'- gGCGUCACuccgcugGCCCGCAGCccgcaGGCU-UCGCCa -3'
miRNA:   3'- -CGCGGUG-------CGGGCGUCG-----CCGGuGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.