miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 19742 0.71 0.085018
Target:  5'- cCGCCGCGCUCGaccgucgccaccaUGGCGGCaugaagaagaACCGCCu -3'
miRNA:   3'- cGCGGUGCGGGC-------------GUCGCCGg---------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11229 0.71 0.085252
Target:  5'- gGgGCCACaggaccaggaaGCCCaggGCGGCGGCCAgggCGCCc -3'
miRNA:   3'- -CgCGGUG-----------CGGG---CGUCGCCGGUg--GCGG- -5'
23050 3' -65.2 NC_005178.1 + 12171 0.71 0.085252
Target:  5'- gGCGgCGCGCCCau--CGGCCAggcCCGCCa -3'
miRNA:   3'- -CGCgGUGCGGGcgucGCCGGU---GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 33137 0.71 0.087144
Target:  5'- cCGUCGCaacccggauaaaCCCGCAGuUGGCCACCuGCCg -3'
miRNA:   3'- cGCGGUGc-----------GGGCGUC-GCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 6918 0.71 0.08981
Target:  5'- uCGCCGCugaggugGCCCGCAGCaGCCAgacgaaaGCCg -3'
miRNA:   3'- cGCGGUG-------CGGGCGUCGcCGGUgg-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 11144 0.71 0.090057
Target:  5'- aGCGCgGgCGCCC----UGGCCGCCGCCc -3'
miRNA:   3'- -CGCGgU-GCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 32094 0.71 0.092555
Target:  5'- -gGCUAUGCCCGUuucgcgaauGGuCGGCCggGCCGUCg -3'
miRNA:   3'- cgCGGUGCGGGCG---------UC-GCCGG--UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28384 0.7 0.094859
Target:  5'- -aGCCACuCCCGCcaccagccacuccAGCGGCC-CCGgCa -3'
miRNA:   3'- cgCGGUGcGGGCG-------------UCGCCGGuGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 34586 0.7 0.095118
Target:  5'- aGCGCCGCcCCUGCGacGCaGCgACCGCg -3'
miRNA:   3'- -CGCGGUGcGGGCGU--CGcCGgUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 6205 0.7 0.095118
Target:  5'- uGUGCUA-GCCuuCGCGGC-GCUACCGCCu -3'
miRNA:   3'- -CGCGGUgCGG--GCGUCGcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10390 0.7 0.095118
Target:  5'- cGCGCUucgccccuccGCGCCCgGCccuCGGCUAuCCGCCa -3'
miRNA:   3'- -CGCGG----------UGCGGG-CGuc-GCCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11752 0.7 0.095118
Target:  5'- aUGCCACGgCCGUGGCccgaGCCAuggggguuCCGCCg -3'
miRNA:   3'- cGCGGUGCgGGCGUCGc---CGGU--------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16417 0.7 0.100448
Target:  5'- uGCGCCAUGaCCUacugGCuGCGGaugcccgccagcUCGCCGCCa -3'
miRNA:   3'- -CGCGGUGC-GGG----CGuCGCC------------GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30671 0.7 0.103217
Target:  5'- gGCGguuCCGCGCUggaGCAGCGGguaCACgCGCCa -3'
miRNA:   3'- -CGC---GGUGCGGg--CGUCGCCg--GUG-GCGG- -5'
23050 3' -65.2 NC_005178.1 + 17053 0.7 0.103217
Target:  5'- cGgGCCAUcUUCGCcauGCGGCCggagGCCGCCa -3'
miRNA:   3'- -CgCGGUGcGGGCGu--CGCCGG----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16082 0.7 0.103217
Target:  5'- cGCGCCACGUaucccgagCGCGaacGCGGCUugUGCa -3'
miRNA:   3'- -CGCGGUGCGg-------GCGU---CGCCGGugGCGg -5'
23050 3' -65.2 NC_005178.1 + 13137 0.7 0.106058
Target:  5'- aGCGCCugGCCaGCuucauccgugAGCGGUUcCCGCa -3'
miRNA:   3'- -CGCGGugCGGgCG----------UCGCCGGuGGCGg -5'
23050 3' -65.2 NC_005178.1 + 21079 0.7 0.108973
Target:  5'- -gGUCAgGCCgGUGGCGGUgcUGCCGCCc -3'
miRNA:   3'- cgCGGUgCGGgCGUCGCCG--GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5248 0.7 0.108973
Target:  5'- cGCGUCGCGguuaaCCUggaGCAGuUGGCCgagGCCGCCa -3'
miRNA:   3'- -CGCGGUGC-----GGG---CGUC-GCCGG---UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 20996 0.7 0.108973
Target:  5'- aCGCUACcggGUUCGCcgugGGCGGCagCACCGCCa -3'
miRNA:   3'- cGCGGUG---CGGGCG----UCGCCG--GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.