miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 11835 0.67 0.185262
Target:  5'- -gGCCG-GCCUGCGGCGGaacccCCAUgGCUc -3'
miRNA:   3'- cgCGGUgCGGGCGUCGCC-----GGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 10927 0.67 0.180524
Target:  5'- gGCGUCcucgacguGCGCCCGaacaAGUGGCUGCCaGUUg -3'
miRNA:   3'- -CGCGG--------UGCGGGCg---UCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 22945 0.67 0.180524
Target:  5'- --uCCGCGUCCGCaucGGCgauagccugGGCCacgACCGCCg -3'
miRNA:   3'- cgcGGUGCGGGCG---UCG---------CCGG---UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5949 0.67 0.166948
Target:  5'- gGCGgCGCGUCuCGCgcuggacgaugGGCGGCCGaggGCCg -3'
miRNA:   3'- -CGCgGUGCGG-GCG-----------UCGCCGGUgg-CGG- -5'
23050 3' -65.2 NC_005178.1 + 5633 0.67 0.16263
Target:  5'- uCGCCGCGCuugaauCCGCGGaucGCCucgacguaGCCGCCc -3'
miRNA:   3'- cGCGGUGCG------GGCGUCgc-CGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25458 0.67 0.158413
Target:  5'- aGCGCUggacGCGCUgGCGGaaaguucggauCGGaugaaCACCGCCa -3'
miRNA:   3'- -CGCGG----UGCGGgCGUC-----------GCCg----GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 22146 0.67 0.16263
Target:  5'- gGCGCCgaaGCCCGC-GCuGCUGCCGg- -3'
miRNA:   3'- -CGCGGug-CGGGCGuCGcCGGUGGCgg -5'
23050 3' -65.2 NC_005178.1 + 9673 0.67 0.166948
Target:  5'- uCGCCGaGCCgGCcgaGGCGGUCACCuuGCUc -3'
miRNA:   3'- cGCGGUgCGGgCG---UCGCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 25574 0.67 0.166948
Target:  5'- aCGCCgagcGCGCCCGCgaacAGCaGGUUGCaGCCg -3'
miRNA:   3'- cGCGG----UGCGGGCG----UCG-CCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 6392 0.67 0.170922
Target:  5'- gGCGUCuGCGCUcgauuguCGCGGCgaGGCgCGCCGCg -3'
miRNA:   3'- -CGCGG-UGCGG-------GCGUCG--CCG-GUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 8762 0.67 0.171369
Target:  5'- gGCGaCUugGCCagcgugcggGCGGCGGUCuuugcaACCGCUg -3'
miRNA:   3'- -CGC-GGugCGGg--------CGUCGCCGG------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10026 0.67 0.175436
Target:  5'- cGUGCUGCGCaaaaucaCCGCGcuccUGGCCAgCGCCc -3'
miRNA:   3'- -CGCGGUGCG-------GGCGUc---GCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31974 0.67 0.180056
Target:  5'- -aGCCugGUCUauGCAcugcGCGGCCagcagaaGCCGCUa -3'
miRNA:   3'- cgCGGugCGGG--CGU----CGCCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 35401 0.67 0.180524
Target:  5'- aGgGCCAacugGCCC-CGGCgcuGGCCGCCaCCg -3'
miRNA:   3'- -CgCGGUg---CGGGcGUCG---CCGGUGGcGG- -5'
23050 3' -65.2 NC_005178.1 + 2814 0.67 0.166948
Target:  5'- uCGCCgAUGCCCGcCAGgGGgUGCUGCa -3'
miRNA:   3'- cGCGG-UGCGGGC-GUCgCCgGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 23513 0.67 0.16263
Target:  5'- cGCGCCggGCGCCC----UGGCCGUCGCCc -3'
miRNA:   3'- -CGCGG--UGCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3971 0.67 0.166512
Target:  5'- aGCGcCCAgGCUucguugggggucaUGUGGCGGCgGCgGCCg -3'
miRNA:   3'- -CGC-GGUgCGG-------------GCGUCGCCGgUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 36303 0.67 0.166948
Target:  5'- uUGUUGCGCgCGUAGuuGCUACCGUCg -3'
miRNA:   3'- cGCGGUGCGgGCGUCgcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6563 0.67 0.166948
Target:  5'- uGCG-CACGgUgGCGGCGGUgACCugGCCg -3'
miRNA:   3'- -CGCgGUGCgGgCGUCGCCGgUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 13179 0.67 0.166948
Target:  5'- gGCGCUggaGCaCCUccauaGCGGUGGCCAgCGCUg -3'
miRNA:   3'- -CGCGG---UGcGGG-----CGUCGCCGGUgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.