miRNA display CGI


Results 41 - 60 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 9673 0.67 0.166948
Target:  5'- uCGCCGaGCCgGCcgaGGCGGUCACCuuGCUc -3'
miRNA:   3'- cGCGGUgCGGgCG---UCGCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 25574 0.67 0.166948
Target:  5'- aCGCCgagcGCGCCCGCgaacAGCaGGUUGCaGCCg -3'
miRNA:   3'- cGCGG----UGCGGGCG----UCG-CCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 24319 0.67 0.170032
Target:  5'- cUGCCgACGCcggccccgacccagCCGUucaaAGCGGCCuaugaguacGCCGCCa -3'
miRNA:   3'- cGCGG-UGCG--------------GGCG----UCGCCGG---------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6392 0.67 0.170922
Target:  5'- gGCGUCuGCGCUcgauuguCGCGGCgaGGCgCGCCGCg -3'
miRNA:   3'- -CGCGG-UGCGG-------GCGUCG--CCG-GUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 8762 0.67 0.171369
Target:  5'- gGCGaCUugGCCagcgugcggGCGGCGGUCuuugcaACCGCUg -3'
miRNA:   3'- -CGC-GGugCGGg--------CGUCGCCGG------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10026 0.67 0.175436
Target:  5'- cGUGCUGCGCaaaaucaCCGCGcuccUGGCCAgCGCCc -3'
miRNA:   3'- -CGCGGUGCG-------GGCGUc---GCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31974 0.67 0.180056
Target:  5'- -aGCCugGUCUauGCAcugcGCGGCCagcagaaGCCGCUa -3'
miRNA:   3'- cgCGGugCGGG--CGU----CGCCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 33055 0.67 0.158413
Target:  5'- cGUGCCGCuCgaUGUAGCGGCUAUCGUa -3'
miRNA:   3'- -CGCGGUGcGg-GCGUCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 10927 0.67 0.180524
Target:  5'- gGCGUCcucgacguGCGCCCGaacaAGUGGCUGCCaGUUg -3'
miRNA:   3'- -CGCGG--------UGCGGGCg---UCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 26166 0.67 0.180524
Target:  5'- gGCGUugUugGCCgaCGCuGCGGCagcguCCGCCc -3'
miRNA:   3'- -CGCG--GugCGG--GCGuCGCCGgu---GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 20491 0.67 0.180524
Target:  5'- uGgGCCAgGCCgaggguuucgCGCAGCuuGGCCAgguuggUCGCCu -3'
miRNA:   3'- -CgCGGUgCGG----------GCGUCG--CCGGU------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 9729 0.67 0.180524
Target:  5'- cCGCCucgGCCgGCucGGCGaaGCCACCgGCCg -3'
miRNA:   3'- cGCGGug-CGGgCG--UCGC--CGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 11835 0.67 0.185262
Target:  5'- -gGCCG-GCCUGCGGCGGaacccCCAUgGCUc -3'
miRNA:   3'- cgCGGUgCGGGCGUCGCC-----GGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 28290 0.67 0.158413
Target:  5'- aGCgGCCugGauaGCGGCGGC-GCCGCUc -3'
miRNA:   3'- -CG-CGGugCgggCGUCGCCGgUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3971 0.67 0.166512
Target:  5'- aGCGcCCAgGCUucguugggggucaUGUGGCGGCgGCgGCCg -3'
miRNA:   3'- -CGC-GGUgCGG-------------GCGUCGCCGgUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 22923 0.67 0.180524
Target:  5'- cUG-CACGCCCGCuaccAGCuGCCGCUgGCCc -3'
miRNA:   3'- cGCgGUGCGGGCG----UCGcCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 24249 0.67 0.185262
Target:  5'- gGCGCCccuCGaCCCGCAguauuacgcccuGCGaGCCGauggCGCCu -3'
miRNA:   3'- -CGCGGu--GC-GGGCGU------------CGC-CGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 36303 0.67 0.166948
Target:  5'- uUGUUGCGCgCGUAGuuGCUACCGUCg -3'
miRNA:   3'- cGCGGUGCGgGCGUCgcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13763 0.67 0.180524
Target:  5'- gGUGCCuACGgCgGCaucaaGGCGGCCACUGaCa -3'
miRNA:   3'- -CGCGG-UGCgGgCG-----UCGCCGGUGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 5633 0.67 0.16263
Target:  5'- uCGCCGCGCuugaauCCGCGGaucGCCucgacguaGCCGCCc -3'
miRNA:   3'- cGCGGUGCG------GGCGUCgc-CGG--------UGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.