miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 9673 0.67 0.166948
Target:  5'- uCGCCGaGCCgGCcgaGGCGGUCACCuuGCUc -3'
miRNA:   3'- cGCGGUgCGGgCG---UCGCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 9729 0.67 0.180524
Target:  5'- cCGCCucgGCCgGCucGGCGaaGCCACCgGCCg -3'
miRNA:   3'- cGCGGug-CGGgCG--UCGC--CGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 10026 0.67 0.175436
Target:  5'- cGUGCUGCGCaaaaucaCCGCGcuccUGGCCAgCGCCc -3'
miRNA:   3'- -CGCGGUGCG-------GGCGUc---GCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10390 0.7 0.095118
Target:  5'- cGCGCUucgccccuccGCGCCCgGCccuCGGCUAuCCGCCa -3'
miRNA:   3'- -CGCGG----------UGCGGG-CGuc-GCCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10506 0.71 0.0785
Target:  5'- cGCGCCaccguaccaGCGCCUugugGCAGCGaGCCACguaaauuucuuCGCCc -3'
miRNA:   3'- -CGCGG---------UGCGGG----CGUCGC-CGGUG-----------GCGG- -5'
23050 3' -65.2 NC_005178.1 + 10642 0.66 0.205327
Target:  5'- gGCGCaACGCCC-CGGcCGGCgucuCCGCg -3'
miRNA:   3'- -CGCGgUGCGGGcGUC-GCCGgu--GGCGg -5'
23050 3' -65.2 NC_005178.1 + 10867 0.67 0.175893
Target:  5'- aGCGUUacgACGCUCGCGGCugGGCU-CgGCCa -3'
miRNA:   3'- -CGCGG---UGCGGGCGUCG--CCGGuGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 10927 0.67 0.180524
Target:  5'- gGCGUCcucgacguGCGCCCGaacaAGUGGCUGCCaGUUg -3'
miRNA:   3'- -CGCGG--------UGCGGGCg---UCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 11144 0.71 0.090057
Target:  5'- aGCGCgGgCGCCC----UGGCCGCCGCCc -3'
miRNA:   3'- -CGCGgU-GCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11186 0.66 0.199629
Target:  5'- cGCGCUgauguggAUGCCaaacauuuucaGCAGCGcGgCGCUGCCg -3'
miRNA:   3'- -CGCGG-------UGCGGg----------CGUCGC-CgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11229 0.71 0.085252
Target:  5'- gGgGCCACaggaccaggaaGCCCaggGCGGCGGCCAgggCGCCc -3'
miRNA:   3'- -CgCGGUG-----------CGGG---CGUCGCCGGUg--GCGG- -5'
23050 3' -65.2 NC_005178.1 + 11394 0.71 0.080692
Target:  5'- cCGCCugGUggcugaUCGguGCGGcCCugCGCCu -3'
miRNA:   3'- cGCGGugCG------GGCguCGCC-GGugGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11752 0.7 0.095118
Target:  5'- aUGCCACGgCCGUGGCccgaGCCAuggggguuCCGCCg -3'
miRNA:   3'- cGCGGUGCgGGCGUCGc---CGGU--------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11835 0.67 0.185262
Target:  5'- -gGCCG-GCCUGCGGCGGaacccCCAUgGCUc -3'
miRNA:   3'- cgCGGUgCGGGCGUCGCC-----GGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 12109 0.68 0.138777
Target:  5'- cGgGCCugGCCgaugggCGC-GCcGCCugCGCCg -3'
miRNA:   3'- -CgCGGugCGG------GCGuCGcCGGugGCGG- -5'
23050 3' -65.2 NC_005178.1 + 12171 0.71 0.085252
Target:  5'- gGCGgCGCGCCCau--CGGCCAggcCCGCCa -3'
miRNA:   3'- -CGCgGUGCGGGcgucGCCGGU---GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 12229 0.66 0.210629
Target:  5'- aGCGCCugGCCa--AGCGGgCCGacagCGaCCa -3'
miRNA:   3'- -CGCGGugCGGgcgUCGCC-GGUg---GC-GG- -5'
23050 3' -65.2 NC_005178.1 + 12436 0.66 0.195069
Target:  5'- -aGCCAaggcCGCCgGUAGUGGCCuggGCgGCa -3'
miRNA:   3'- cgCGGU----GCGGgCGUCGCCGG---UGgCGg -5'
23050 3' -65.2 NC_005178.1 + 12747 0.78 0.022208
Target:  5'- cGCGCCGCGagcaggCCGCAGgcaaccaGGCCAcCCGCCa -3'
miRNA:   3'- -CGCGGUGCg-----GGCGUCg------CCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 12772 0.75 0.041127
Target:  5'- uGCGCCGCGCCUacguccucgaccgGCAGUcccuggaGGUCGCgGCCg -3'
miRNA:   3'- -CGCGGUGCGGG-------------CGUCG-------CCGGUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.