miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 5342 0.73 0.059505
Target:  5'- cGCGCCG-GCCCugaacgGUGGCGGCCuCgGCCa -3'
miRNA:   3'- -CGCGGUgCGGG------CGUCGCCGGuGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 5543 0.66 0.205327
Target:  5'- cUGCCuGCGCCUG-GGCGGCUA-CGUCg -3'
miRNA:   3'- cGCGG-UGCGGGCgUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5633 0.67 0.16263
Target:  5'- uCGCCGCGCuugaauCCGCGGaucGCCucgacguaGCCGCCc -3'
miRNA:   3'- cGCGGUGCG------GGCGUCgc-CGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5815 0.68 0.150274
Target:  5'- aCGCCGgauaccUGaCCCGCAaCGGCCGCCauuacGCCc -3'
miRNA:   3'- cGCGGU------GC-GGGCGUcGCCGGUGG-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 5904 0.66 0.19011
Target:  5'- aGCgGCCugGCUugagggCGUaauGGCGGCCGuuGCg -3'
miRNA:   3'- -CG-CGGugCGG------GCG---UCGCCGGUggCGg -5'
23050 3' -65.2 NC_005178.1 + 5949 0.67 0.166948
Target:  5'- gGCGgCGCGUCuCGCgcuggacgaugGGCGGCCGaggGCCg -3'
miRNA:   3'- -CGCgGUGCGG-GCG-----------UCGCCGGUgg-CGG- -5'
23050 3' -65.2 NC_005178.1 + 6205 0.7 0.095118
Target:  5'- uGUGCUA-GCCuuCGCGGC-GCUACCGCCu -3'
miRNA:   3'- -CGCGGUgCGG--GCGUCGcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6392 0.67 0.170922
Target:  5'- gGCGUCuGCGCUcgauuguCGCGGCgaGGCgCGCCGCg -3'
miRNA:   3'- -CGCGG-UGCGG-------GCGUCG--CCG-GUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 6563 0.67 0.166948
Target:  5'- uGCG-CACGgUgGCGGCGGUgACCugGCCg -3'
miRNA:   3'- -CGCgGUGCgGgCGUCGCCGgUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 6695 0.73 0.064681
Target:  5'- aGCGCCugGaCCG-GGCGGCCucACUGCUg -3'
miRNA:   3'- -CGCGGugCgGGCgUCGCCGG--UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6918 0.71 0.08981
Target:  5'- uCGCCGCugaggugGCCCGCAGCaGCCAgacgaaaGCCg -3'
miRNA:   3'- cGCGGUG-------CGGGCGUCGcCGGUgg-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 7106 0.69 0.124703
Target:  5'- aGUGCaGCGaguaCCUcCAGCGGCCGgCGCCg -3'
miRNA:   3'- -CGCGgUGC----GGGcGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 7172 0.68 0.138777
Target:  5'- cGUGCCGCGCCUGUccacGCaacccGCaUACCGCCc -3'
miRNA:   3'- -CGCGGUGCGGGCGu---CGc----CG-GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 7173 0.67 0.171369
Target:  5'- gGCGCCGgcCGCUggagguacuCGCuGCacucgaccgaGGUCACCGCCu -3'
miRNA:   3'- -CGCGGU--GCGG---------GCGuCG----------CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 8762 0.67 0.171369
Target:  5'- gGCGaCUugGCCagcgugcggGCGGCGGUCuuugcaACCGCUg -3'
miRNA:   3'- -CGC-GGugCGGg--------CGUCGCCGG------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 8775 0.66 0.199629
Target:  5'- uCGCCugGguguuccuCCCGCAGCucgaugaGGCCAUCGa- -3'
miRNA:   3'- cGCGGugC--------GGGCGUCG-------CCGGUGGCgg -5'
23050 3' -65.2 NC_005178.1 + 8876 0.72 0.067243
Target:  5'- cGCGCCGggcgacuuucuugcCGaCCUGguGCGGCUcagcgguugcaaagACCGCCg -3'
miRNA:   3'- -CGCGGU--------------GC-GGGCguCGCCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 9051 0.81 0.014494
Target:  5'- aUGCCGCGCCgCGCucGCGGUCACCgGCCu -3'
miRNA:   3'- cGCGGUGCGG-GCGu-CGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 9359 0.66 0.195069
Target:  5'- aCGgCGCGCUCGCGGUGaGgaACCGCa -3'
miRNA:   3'- cGCgGUGCGGGCGUCGC-CggUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 9580 0.84 0.007097
Target:  5'- uGCGCCGCGCUgCGCugGGCGGUCGCCGCUu -3'
miRNA:   3'- -CGCGGUGCGG-GCG--UCGCCGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.