miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 31974 0.67 0.180056
Target:  5'- -aGCCugGUCUauGCAcugcGCGGCCagcagaaGCCGCUa -3'
miRNA:   3'- cgCGGugCGGG--CGU----CGCCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31911 0.66 0.195069
Target:  5'- gGCGCU--GCCgGuCAuCGGCCAUCGCUg -3'
miRNA:   3'- -CGCGGugCGGgC-GUcGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31750 0.73 0.055811
Target:  5'- aGCGCCugGCCCgagguaaugccgGCgacgaccuacagggGGCGGCCAgUGCUg -3'
miRNA:   3'- -CGCGGugCGGG------------CG--------------UCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31642 0.69 0.118173
Target:  5'- -gGuCCAgGCCgGCGGCGG-UACUGCCu -3'
miRNA:   3'- cgC-GGUgCGGgCGUCGCCgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31591 0.73 0.054731
Target:  5'- gGCGuCCuCGCCgCGCAGCaucGCCagACCGCCg -3'
miRNA:   3'- -CGC-GGuGCGG-GCGUCGc--CGG--UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31434 0.72 0.06837
Target:  5'- aGCGUCAUGUCCaGUAGCuGCCGCuCGCg -3'
miRNA:   3'- -CGCGGUGCGGG-CGUCGcCGGUG-GCGg -5'
23050 3' -65.2 NC_005178.1 + 31049 0.67 0.16263
Target:  5'- cGCuGUCugGCCa--GGCGucGCCGCCGCUg -3'
miRNA:   3'- -CG-CGGugCGGgcgUCGC--CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30876 0.69 0.115029
Target:  5'- uGCGCCGCGUagaCGcCGGCccaggucgaGGCCgcgACCGCUg -3'
miRNA:   3'- -CGCGGUGCGg--GC-GUCG---------CCGG---UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30774 0.69 0.131567
Target:  5'- -aGCUGaaccaggacaucCGCCUgGCAGCGGUCGCgGCCu -3'
miRNA:   3'- cgCGGU------------GCGGG-CGUCGCCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 30671 0.7 0.103217
Target:  5'- gGCGguuCCGCGCUggaGCAGCGGguaCACgCGCCa -3'
miRNA:   3'- -CGC---GGUGCGGg--CGUCGCCg--GUG-GCGG- -5'
23050 3' -65.2 NC_005178.1 + 30338 0.69 0.111963
Target:  5'- -aGCCGCaGCaCGCuGCcGCCGCCGCUg -3'
miRNA:   3'- cgCGGUG-CGgGCGuCGcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30276 0.66 0.216048
Target:  5'- -aGCgGCGgCgGCAGCGuGCUGCgGCUa -3'
miRNA:   3'- cgCGgUGCgGgCGUCGC-CGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 30045 0.68 0.142139
Target:  5'- aGCGCCGgGCCauuCAcGCGcuaucaccuguucGCCACCGCUg -3'
miRNA:   3'- -CGCGGUgCGGgc-GU-CGC-------------CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 29678 0.66 0.194568
Target:  5'- gGCGCCGucgaaauCGCCCagGUAGCGGCguCCcUCg -3'
miRNA:   3'- -CGCGGU-------GCGGG--CGUCGCCGguGGcGG- -5'
23050 3' -65.2 NC_005178.1 + 29571 0.72 0.074286
Target:  5'- aGUGUCACugcuGCCCGCAuauCGGCCGCaGCCc -3'
miRNA:   3'- -CGCGGUG----CGGGCGUc--GCCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 29443 0.71 0.080692
Target:  5'- aGCaGCUGCGCUCGUAGgGGCUGCUgauGCCc -3'
miRNA:   3'- -CG-CGGUGCGGGCGUCgCCGGUGG---CGG- -5'
23050 3' -65.2 NC_005178.1 + 28940 0.74 0.053224
Target:  5'- --cCCGCGUCCgGCA-CGGCCAUCGCCg -3'
miRNA:   3'- cgcGGUGCGGG-CGUcGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28620 0.72 0.06837
Target:  5'- -gGCgACGCCCccgguggcgcgGCGGaCGGCCcCCGCCc -3'
miRNA:   3'- cgCGgUGCGGG-----------CGUC-GCCGGuGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28592 0.68 0.150274
Target:  5'- cGCGCCaucccuaccACGCCCaaGCA-UGGgCGCCGCUc -3'
miRNA:   3'- -CGCGG---------UGCGGG--CGUcGCCgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28532 0.69 0.115029
Target:  5'- gGCGCUACaugaCUggGCGGgGGCCGuCCGCCg -3'
miRNA:   3'- -CGCGGUGcg--GG--CGUCgCCGGU-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.