miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 37149 0.66 0.200141
Target:  5'- aCGCCAgguCGCCgaccgggaCGcCAGCGaguGCUGCCGCCu -3'
miRNA:   3'- cGCGGU---GCGG--------GC-GUCGC---CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36618 0.69 0.131567
Target:  5'- gGCGgauagaacuCCAC-CCCGUAGCgggcaaGGCUACCGCUc -3'
miRNA:   3'- -CGC---------GGUGcGGGCGUCG------CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36547 0.68 0.150274
Target:  5'- -aGCCuuGCCCGCuacggGGUGGaguucuaUACCGCCc -3'
miRNA:   3'- cgCGGugCGGGCG-----UCGCCg------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36303 0.67 0.166948
Target:  5'- uUGUUGCGCgCGUAGuuGCUACCGUCg -3'
miRNA:   3'- cGCGGUGCGgGCGUCgcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36153 0.66 0.19011
Target:  5'- -gGCCACGCCUGCuGGCcaGGUCAagaCGUa -3'
miRNA:   3'- cgCGGUGCGGGCG-UCG--CCGGUg--GCGg -5'
23050 3' -65.2 NC_005178.1 + 36060 0.69 0.114719
Target:  5'- cCGCUugGCCCGCuGGUGGgcaacgggugcgaCCACgGCUa -3'
miRNA:   3'- cGCGGugCGGGCG-UCGCC-------------GGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 35781 0.73 0.054731
Target:  5'- gGCG-CACGuCCUGgAGCGGaCCAuCCGCCa -3'
miRNA:   3'- -CGCgGUGC-GGGCgUCGCC-GGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 35483 0.76 0.033013
Target:  5'- aGCGUCAggcUGUCgGUGGCGGCCAgCGCCg -3'
miRNA:   3'- -CGCGGU---GCGGgCGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 35408 0.68 0.149877
Target:  5'- aGCGUCACGCCCuggcuGUAGaccguuuCGuCCACCGCUu -3'
miRNA:   3'- -CGCGGUGCGGG-----CGUC-------GCcGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 35401 0.67 0.180524
Target:  5'- aGgGCCAacugGCCC-CGGCgcuGGCCGCCaCCg -3'
miRNA:   3'- -CgCGGUg---CGGGcGUCG---CCGGUGGcGG- -5'
23050 3' -65.2 NC_005178.1 + 34880 0.68 0.154295
Target:  5'- gGCGCCACGCCgGUu---GUCGCCGgCa -3'
miRNA:   3'- -CGCGGUGCGGgCGucgcCGGUGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 34717 0.68 0.150274
Target:  5'- -gGCUACGggCGCGGCGGUCGaacaCGCCc -3'
miRNA:   3'- cgCGGUGCggGCGUCGCCGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 34665 0.79 0.018727
Target:  5'- cCGCCGCGCCCGUAGCcugaacccuGGCCAgCCGUUc -3'
miRNA:   3'- cGCGGUGCGGGCGUCG---------CCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 34586 0.7 0.095118
Target:  5'- aGCGCCGCcCCUGCGacGCaGCgACCGCg -3'
miRNA:   3'- -CGCGGUGcGGGCGU--CGcCGgUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 33902 0.78 0.024182
Target:  5'- cUGCCGCGCCUGgcggcgaugcuCGGCGGCCGgUGCCg -3'
miRNA:   3'- cGCGGUGCGGGC-----------GUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 33274 0.67 0.157997
Target:  5'- gGCGCCGaagCCGCAGaaGCCcaagccgACCGCCu -3'
miRNA:   3'- -CGCGGUgcgGGCGUCgcCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 33137 0.71 0.087144
Target:  5'- cCGUCGCaacccggauaaaCCCGCAGuUGGCCACCuGCCg -3'
miRNA:   3'- cGCGGUGc-----------GGGCGUC-GCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 33055 0.67 0.158413
Target:  5'- cGUGCCGCuCgaUGUAGCGGCUAUCGUa -3'
miRNA:   3'- -CGCGGUGcGg-GCGUCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 32494 0.66 0.199629
Target:  5'- cGCGCCACgGCugaacugauacagCCGCAcCGGCUGCCcauCCg -3'
miRNA:   3'- -CGCGGUG-CG-------------GGCGUcGCCGGUGGc--GG- -5'
23050 3' -65.2 NC_005178.1 + 32094 0.71 0.092555
Target:  5'- -gGCUAUGCCCGUuucgcgaauGGuCGGCCggGCCGUCg -3'
miRNA:   3'- cgCGGUGCGGGCG---------UC-GCCGG--UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.