miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 4932 0.72 0.076365
Target:  5'- uCGCCGaggaacUGgCCGcCAGCGGCCGCCcGCUg -3'
miRNA:   3'- cGCGGU------GCgGGC-GUCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 31750 0.73 0.055811
Target:  5'- aGCGCCugGCCCgagguaaugccgGCgacgaccuacagggGGCGGCCAgUGCUg -3'
miRNA:   3'- -CGCGGugCGGG------------CG--------------UCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3868 0.73 0.057871
Target:  5'- uUGCCGCGCaucguugacCCGaacacCGGCCGCCGCCg -3'
miRNA:   3'- cGCGGUGCG---------GGCguc--GCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6695 0.73 0.064681
Target:  5'- aGCGCCugGaCCG-GGCGGCCucACUGCUg -3'
miRNA:   3'- -CGCGGugCgGGCgUCGCCGG--UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3758 0.72 0.066501
Target:  5'- cGCGCCGgGCCauCGCcaagGGCGGCaccauGCCGCUg -3'
miRNA:   3'- -CGCGGUgCGG--GCG----UCGCCGg----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13088 0.72 0.06837
Target:  5'- cGCGUUcUGCCCGaaacauCAGCgcuGGCCACCGCUa -3'
miRNA:   3'- -CGCGGuGCGGGC------GUCG---CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25841 0.72 0.071072
Target:  5'- aCGCCAUGgCCGUGGcCGGCauuucggcaggucagUACCGCCa -3'
miRNA:   3'- cGCGGUGCgGGCGUC-GCCG---------------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5166 0.72 0.074286
Target:  5'- gGCGCCGgucuacaGcCCCGgAGUGGCUAUCGCUg -3'
miRNA:   3'- -CGCGGUg------C-GGGCgUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 26163 0.72 0.076155
Target:  5'- aGCGCCuuuaucaucaucgGCG-CgGCGGUGGCCGCUGCg -3'
miRNA:   3'- -CGCGG-------------UGCgGgCGUCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 28940 0.74 0.053224
Target:  5'- --cCCGCGUCCgGCA-CGGCCAUCGCCg -3'
miRNA:   3'- cgcGGUGCGGG-CGUcGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 20481 0.74 0.051757
Target:  5'- cCGCCAcCGCCCaGCugaaGGUCGCCGCCc -3'
miRNA:   3'- cGCGGU-GCGGG-CGucg-CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25617 0.75 0.043749
Target:  5'- aGCgGCCGaGgCUGCGGCGaaaGCCACCGCCg -3'
miRNA:   3'- -CG-CGGUgCgGGCGUCGC---CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 9051 0.81 0.014494
Target:  5'- aUGCCGCGCCgCGCucGCGGUCACCgGCCu -3'
miRNA:   3'- cGCGGUGCGG-GCGu-CGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 34665 0.79 0.018727
Target:  5'- cCGCCGCGCCCGUAGCcugaacccuGGCCAgCCGUUc -3'
miRNA:   3'- cGCGGUGCGGGCGUCG---------CCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 33902 0.78 0.024182
Target:  5'- cUGCCGCGCCUGgcggcgaugcuCGGCGGCCGgUGCCg -3'
miRNA:   3'- cGCGGUGCGGGC-----------GUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28230 0.76 0.033672
Target:  5'- gGCGCCGcCGCuauccaggccgcugCCGCcucGCuGGCCGCCGCCa -3'
miRNA:   3'- -CGCGGU-GCG--------------GGCGu--CG-CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3038 0.76 0.036955
Target:  5'- aGCGUgGCGCCCuGguGCcgaaGGuCCGCCGCCc -3'
miRNA:   3'- -CGCGgUGCGGG-CguCG----CC-GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 14641 0.75 0.039096
Target:  5'- uCGCCGCGCuggaguucuaCCaGgAGCGcGCCGCCGCCa -3'
miRNA:   3'- cGCGGUGCG----------GG-CgUCGC-CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 2714 0.75 0.040212
Target:  5'- cGCGCCGCGCugcugaacgCCGCccugggcgaGGUGGCCAccaaggcgguCCGCCa -3'
miRNA:   3'- -CGCGGUGCG---------GGCG---------UCGCCGGU----------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 12772 0.75 0.041127
Target:  5'- uGCGCCGCGCCUacguccucgaccgGCAGUcccuggaGGUCGCgGCCg -3'
miRNA:   3'- -CGCGGUGCGGG-------------CGUCG-------CCGGUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.