miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 26249 1.12 0.000038
Target:  5'- aGCGCCACGCCCGCAGCGGCCACCGCCg -3'
miRNA:   3'- -CGCGGUGCGGGCGUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 12171 0.71 0.085252
Target:  5'- gGCGgCGCGCCCau--CGGCCAggcCCGCCa -3'
miRNA:   3'- -CGCgGUGCGGGcgucGCCGGU---GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 33137 0.71 0.087144
Target:  5'- cCGUCGCaacccggauaaaCCCGCAGuUGGCCACCuGCCg -3'
miRNA:   3'- cGCGGUGc-----------GGGCGUC-GCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 18451 0.66 0.216597
Target:  5'- aUGCCGCGCau-CAGCGGCagggugucgguuacaGCCGCg -3'
miRNA:   3'- cGCGGUGCGggcGUCGCCGg--------------UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 35781 0.73 0.054731
Target:  5'- gGCG-CACGuCCUGgAGCGGaCCAuCCGCCa -3'
miRNA:   3'- -CGCgGUGC-GGGCgUCGCC-GGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31591 0.73 0.054731
Target:  5'- gGCGuCCuCGCCgCGCAGCaucGCCagACCGCCg -3'
miRNA:   3'- -CGC-GGuGCGG-GCGUCGc--CGG--UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5342 0.73 0.059505
Target:  5'- cGCGCCG-GCCCugaacgGUGGCGGCCuCgGCCa -3'
miRNA:   3'- -CGCGGUgCGGG------CGUCGCCGGuGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 17666 0.73 0.062909
Target:  5'- -aGaCCACGgCgaCGcCAGCGGCCGCCGUCa -3'
miRNA:   3'- cgC-GGUGCgG--GC-GUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28620 0.72 0.06837
Target:  5'- -gGCgACGCCCccgguggcgcgGCGGaCGGCCcCCGCCc -3'
miRNA:   3'- cgCGgUGCGGG-----------CGUC-GCCGGuGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 22254 0.71 0.080692
Target:  5'- uGCGCCAgUGCCgGUGGagccauaGGCCAgCUGCCa -3'
miRNA:   3'- -CGCGGU-GCGGgCGUCg------CCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16764 0.72 0.075736
Target:  5'- gGCGCCGgcucaguugggcgaUGCCUGCGcCGGCCugaucgcccaggACCGCCu -3'
miRNA:   3'- -CGCGGU--------------GCGGGCGUcGCCGG------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31434 0.72 0.06837
Target:  5'- aGCGUCAUGUCCaGUAGCuGCCGCuCGCg -3'
miRNA:   3'- -CGCGGUGCGGG-CGUCGcCGGUG-GCGg -5'
23050 3' -65.2 NC_005178.1 + 12747 0.78 0.022208
Target:  5'- cGCGCCGCGagcaggCCGCAGgcaaccaGGCCAcCCGCCa -3'
miRNA:   3'- -CGCGGUGCg-----GGCGUCg------CCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10506 0.71 0.0785
Target:  5'- cGCGCCaccguaccaGCGCCUugugGCAGCGaGCCACguaaauuucuuCGCCc -3'
miRNA:   3'- -CGCGG---------UGCGGG----CGUCGC-CGGUG-----------GCGG- -5'
23050 3' -65.2 NC_005178.1 + 35483 0.76 0.033013
Target:  5'- aGCGUCAggcUGUCgGUGGCGGCCAgCGCCg -3'
miRNA:   3'- -CGCGGU---GCGGgCGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 8876 0.72 0.067243
Target:  5'- cGCGCCGggcgacuuucuugcCGaCCUGguGCGGCUcagcgguugcaaagACCGCCg -3'
miRNA:   3'- -CGCGGU--------------GC-GGGCguCGCCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 29443 0.71 0.080692
Target:  5'- aGCaGCUGCGCUCGUAGgGGCUGCUgauGCCc -3'
miRNA:   3'- -CG-CGGUGCGGGCGUCgCCGGUGG---CGG- -5'
23050 3' -65.2 NC_005178.1 + 11229 0.71 0.085252
Target:  5'- gGgGCCACaggaccaggaaGCCCaggGCGGCGGCCAgggCGCCc -3'
miRNA:   3'- -CgCGGUG-----------CGGG---CGUCGCCGGUg--GCGG- -5'
23050 3' -65.2 NC_005178.1 + 27720 0.76 0.033958
Target:  5'- cGCGcCCAUGCCCacgGCAGCGGCgGCaCGUUg -3'
miRNA:   3'- -CGC-GGUGCGGG---CGUCGCCGgUG-GCGG- -5'
23050 3' -65.2 NC_005178.1 + 12982 0.73 0.057871
Target:  5'- cGCGCCACGUCCucCAGCccaCCACCgGCCa -3'
miRNA:   3'- -CGCGGUGCGGGc-GUCGcc-GGUGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.