miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 399 0.66 0.200141
Target:  5'- uCGCCAuCGCacaGCAGaGGCuccauagaguCACCGCCa -3'
miRNA:   3'- cGCGGU-GCGgg-CGUCgCCG----------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 1700 0.69 0.118173
Target:  5'- uGCGUgGCGgCCGC-GUGGCUuacgGCCGCg -3'
miRNA:   3'- -CGCGgUGCgGGCGuCGCCGG----UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 1772 0.66 0.188644
Target:  5'- aGUGCauCGCGgCCGUAagccacGCGGCCGCCacgcacaucgaccaGCCa -3'
miRNA:   3'- -CGCG--GUGCgGGCGU------CGCCGGUGG--------------CGG- -5'
23050 3' -65.2 NC_005178.1 + 2714 0.75 0.040212
Target:  5'- cGCGCCGCGCugcugaacgCCGCccugggcgaGGUGGCCAccaaggcgguCCGCCa -3'
miRNA:   3'- -CGCGGUGCG---------GGCG---------UCGCCGGU----------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 2814 0.67 0.166948
Target:  5'- uCGCCgAUGCCCGcCAGgGGgUGCUGCa -3'
miRNA:   3'- cGCGG-UGCGGGC-GUCgCCgGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 2814 0.68 0.142517
Target:  5'- uGCGucuCCugGCggaCCGCcuuGGUGGCCACCucGCCc -3'
miRNA:   3'- -CGC---GGugCG---GGCG---UCGCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 2841 0.66 0.198607
Target:  5'- aCGCC-CuagaccugaugaugGCCCGCAcCGGCUACaGCCg -3'
miRNA:   3'- cGCGGuG--------------CGGGCGUcGCCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 2943 0.68 0.140262
Target:  5'- uCGCUAUgcucaagaugGCCCGCGauccucGCGGCCGCCcgagcgcggauggcuGCCg -3'
miRNA:   3'- cGCGGUG----------CGGGCGU------CGCCGGUGG---------------CGG- -5'
23050 3' -65.2 NC_005178.1 + 3038 0.76 0.036955
Target:  5'- aGCGUgGCGCCCuGguGCcgaaGGuCCGCCGCCc -3'
miRNA:   3'- -CGCGgUGCGGG-CguCG----CC-GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3059 0.66 0.210093
Target:  5'- aGCGCUccaggcuGCGCaCGCucGGCaGGCCAuCCGCg -3'
miRNA:   3'- -CGCGG-------UGCGgGCG--UCG-CCGGU-GGCGg -5'
23050 3' -65.2 NC_005178.1 + 3131 0.69 0.111963
Target:  5'- aGCGCaGCGCCCGC-GCuGCCcaugcACUGCUg -3'
miRNA:   3'- -CGCGgUGCGGGCGuCGcCGG-----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3489 0.68 0.146349
Target:  5'- aCGUgACGCCUGCaucaagGGCGGCguCCcgGCCa -3'
miRNA:   3'- cGCGgUGCGGGCG------UCGCCGguGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 3566 0.68 0.154295
Target:  5'- uGCGCgACGag-GCGGuCGGCCuuauggGCCGCCu -3'
miRNA:   3'- -CGCGgUGCgggCGUC-GCCGG------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3682 0.66 0.189132
Target:  5'- cGCGCCGCcaaggaacuGCCCGgcuacauCGGC-GCCgacauggACCGCCa -3'
miRNA:   3'- -CGCGGUG---------CGGGC-------GUCGcCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3758 0.72 0.066501
Target:  5'- cGCGCCGgGCCauCGCcaagGGCGGCaccauGCCGCUg -3'
miRNA:   3'- -CGCGGUgCGG--GCG----UCGCCGg----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3868 0.73 0.057871
Target:  5'- uUGCCGCGCaucguugacCCGaacacCGGCCGCCGCCg -3'
miRNA:   3'- cGCGGUGCG---------GGCguc--GCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3971 0.67 0.166512
Target:  5'- aGCGcCCAgGCUucguugggggucaUGUGGCGGCgGCgGCCg -3'
miRNA:   3'- -CGC-GGUgCGG-------------GCGUCGCCGgUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 4932 0.72 0.076365
Target:  5'- uCGCCGaggaacUGgCCGcCAGCGGCCGCCcGCUg -3'
miRNA:   3'- cGCGGU------GCgGGC-GUCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 5166 0.72 0.074286
Target:  5'- gGCGCCGgucuacaGcCCCGgAGUGGCUAUCGCUg -3'
miRNA:   3'- -CGCGGUg------C-GGGCgUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5248 0.7 0.108973
Target:  5'- cGCGUCGCGguuaaCCUggaGCAGuUGGCCgagGCCGCCa -3'
miRNA:   3'- -CGCGGUGC-----GGG---CGUC-GCCGG---UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.