Results 41 - 60 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23050 | 3' | -65.2 | NC_005178.1 | + | 20491 | 0.67 | 0.180524 |
Target: 5'- uGgGCCAgGCCgaggguuucgCGCAGCuuGGCCAgguuggUCGCCu -3' miRNA: 3'- -CgCGGUgCGG----------GCGUCG--CCGGU------GGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 9729 | 0.67 | 0.180524 |
Target: 5'- cCGCCucgGCCgGCucGGCGaaGCCACCgGCCg -3' miRNA: 3'- cGCGGug-CGGgCG--UCGC--CGGUGG-CGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 22923 | 0.67 | 0.180524 |
Target: 5'- cUG-CACGCCCGCuaccAGCuGCCGCUgGCCc -3' miRNA: 3'- cGCgGUGCGGGCG----UCGcCGGUGG-CGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 35401 | 0.67 | 0.180524 |
Target: 5'- aGgGCCAacugGCCC-CGGCgcuGGCCGCCaCCg -3' miRNA: 3'- -CgCGGUg---CGGGcGUCG---CCGGUGGcGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 31974 | 0.67 | 0.180056 |
Target: 5'- -aGCCugGUCUauGCAcugcGCGGCCagcagaaGCCGCUa -3' miRNA: 3'- cgCGGugCGGG--CGU----CGCCGG-------UGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 10867 | 0.67 | 0.175893 |
Target: 5'- aGCGUUacgACGCUCGCGGCugGGCU-CgGCCa -3' miRNA: 3'- -CGCGG---UGCGGGCGUCG--CCGGuGgCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 10026 | 0.67 | 0.175436 |
Target: 5'- cGUGCUGCGCaaaaucaCCGCGcuccUGGCCAgCGCCc -3' miRNA: 3'- -CGCGGUGCG-------GGCGUc---GCCGGUgGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 19992 | 0.67 | 0.174525 |
Target: 5'- cGCGCU-CGaucaCUGCGGCGGCacuggcggcaucgauCCGCCa -3' miRNA: 3'- -CGCGGuGCg---GGCGUCGCCGgu-------------GGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 7173 | 0.67 | 0.171369 |
Target: 5'- gGCGCCGgcCGCUggagguacuCGCuGCacucgaccgaGGUCACCGCCu -3' miRNA: 3'- -CGCGGU--GCGG---------GCGuCG----------CCGGUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 8762 | 0.67 | 0.171369 |
Target: 5'- gGCGaCUugGCCagcgugcggGCGGCGGUCuuugcaACCGCUg -3' miRNA: 3'- -CGC-GGugCGGg--------CGUCGCCGG------UGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 6392 | 0.67 | 0.170922 |
Target: 5'- gGCGUCuGCGCUcgauuguCGCGGCgaGGCgCGCCGCg -3' miRNA: 3'- -CGCGG-UGCGG-------GCGUCG--CCG-GUGGCGg -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 24319 | 0.67 | 0.170032 |
Target: 5'- cUGCCgACGCcggccccgacccagCCGUucaaAGCGGCCuaugaguacGCCGCCa -3' miRNA: 3'- cGCGG-UGCG--------------GGCG----UCGCCGG---------UGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 2814 | 0.67 | 0.166948 |
Target: 5'- uCGCCgAUGCCCGcCAGgGGgUGCUGCa -3' miRNA: 3'- cGCGG-UGCGGGC-GUCgCCgGUGGCGg -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 9673 | 0.67 | 0.166948 |
Target: 5'- uCGCCGaGCCgGCcgaGGCGGUCACCuuGCUc -3' miRNA: 3'- cGCGGUgCGGgCG---UCGCCGGUGG--CGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 25574 | 0.67 | 0.166948 |
Target: 5'- aCGCCgagcGCGCCCGCgaacAGCaGGUUGCaGCCg -3' miRNA: 3'- cGCGG----UGCGGGCG----UCG-CCGGUGgCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 13179 | 0.67 | 0.166948 |
Target: 5'- gGCGCUggaGCaCCUccauaGCGGUGGCCAgCGCUg -3' miRNA: 3'- -CGCGG---UGcGGG-----CGUCGCCGGUgGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 36303 | 0.67 | 0.166948 |
Target: 5'- uUGUUGCGCgCGUAGuuGCUACCGUCg -3' miRNA: 3'- cGCGGUGCGgGCGUCgcCGGUGGCGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 6563 | 0.67 | 0.166948 |
Target: 5'- uGCG-CACGgUgGCGGCGGUgACCugGCCg -3' miRNA: 3'- -CGCgGUGCgGgCGUCGCCGgUGG--CGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 5949 | 0.67 | 0.166948 |
Target: 5'- gGCGgCGCGUCuCGCgcuggacgaugGGCGGCCGaggGCCg -3' miRNA: 3'- -CGCgGUGCGG-GCG-----------UCGCCGGUgg-CGG- -5' |
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23050 | 3' | -65.2 | NC_005178.1 | + | 3971 | 0.67 | 0.166512 |
Target: 5'- aGCGcCCAgGCUucguugggggucaUGUGGCGGCgGCgGCCg -3' miRNA: 3'- -CGC-GGUgCGG-------------GCGUCGCCGgUGgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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