miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 13763 0.67 0.180524
Target:  5'- gGUGCCuACGgCgGCaucaaGGCGGCCACUGaCa -3'
miRNA:   3'- -CGCGG-UGCgGgCG-----UCGCCGGUGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 17726 0.67 0.180524
Target:  5'- uUGuCUACGCCCGUcucGaCGGUCACCugGCCg -3'
miRNA:   3'- cGC-GGUGCGGGCGu--C-GCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 35401 0.67 0.180524
Target:  5'- aGgGCCAacugGCCC-CGGCgcuGGCCGCCaCCg -3'
miRNA:   3'- -CgCGGUg---CGGGcGUCG---CCGGUGGcGG- -5'
23050 3' -65.2 NC_005178.1 + 22923 0.67 0.180524
Target:  5'- cUG-CACGCCCGCuaccAGCuGCCGCUgGCCc -3'
miRNA:   3'- cGCgGUGCGGGCG----UCGcCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 31974 0.67 0.180056
Target:  5'- -aGCCugGUCUauGCAcugcGCGGCCagcagaaGCCGCUa -3'
miRNA:   3'- cgCGGugCGGG--CGU----CGCCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10867 0.67 0.175893
Target:  5'- aGCGUUacgACGCUCGCGGCugGGCU-CgGCCa -3'
miRNA:   3'- -CGCGG---UGCGGGCGUCG--CCGGuGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 10026 0.67 0.175436
Target:  5'- cGUGCUGCGCaaaaucaCCGCGcuccUGGCCAgCGCCc -3'
miRNA:   3'- -CGCGGUGCG-------GGCGUc---GCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 19992 0.67 0.174525
Target:  5'- cGCGCU-CGaucaCUGCGGCGGCacuggcggcaucgauCCGCCa -3'
miRNA:   3'- -CGCGGuGCg---GGCGUCGCCGgu-------------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 8762 0.67 0.171369
Target:  5'- gGCGaCUugGCCagcgugcggGCGGCGGUCuuugcaACCGCUg -3'
miRNA:   3'- -CGC-GGugCGGg--------CGUCGCCGG------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 7173 0.67 0.171369
Target:  5'- gGCGCCGgcCGCUggagguacuCGCuGCacucgaccgaGGUCACCGCCu -3'
miRNA:   3'- -CGCGGU--GCGG---------GCGuCG----------CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6392 0.67 0.170922
Target:  5'- gGCGUCuGCGCUcgauuguCGCGGCgaGGCgCGCCGCg -3'
miRNA:   3'- -CGCGG-UGCGG-------GCGUCG--CCG-GUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 24319 0.67 0.170032
Target:  5'- cUGCCgACGCcggccccgacccagCCGUucaaAGCGGCCuaugaguacGCCGCCa -3'
miRNA:   3'- cGCGG-UGCG--------------GGCG----UCGCCGG---------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 2814 0.67 0.166948
Target:  5'- uCGCCgAUGCCCGcCAGgGGgUGCUGCa -3'
miRNA:   3'- cGCGG-UGCGGGC-GUCgCCgGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 25574 0.67 0.166948
Target:  5'- aCGCCgagcGCGCCCGCgaacAGCaGGUUGCaGCCg -3'
miRNA:   3'- cGCGG----UGCGGGCG----UCG-CCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 5949 0.67 0.166948
Target:  5'- gGCGgCGCGUCuCGCgcuggacgaugGGCGGCCGaggGCCg -3'
miRNA:   3'- -CGCgGUGCGG-GCG-----------UCGCCGGUgg-CGG- -5'
23050 3' -65.2 NC_005178.1 + 13179 0.67 0.166948
Target:  5'- gGCGCUggaGCaCCUccauaGCGGUGGCCAgCGCUg -3'
miRNA:   3'- -CGCGG---UGcGGG-----CGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6563 0.67 0.166948
Target:  5'- uGCG-CACGgUgGCGGCGGUgACCugGCCg -3'
miRNA:   3'- -CGCgGUGCgGgCGUCGCCGgUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 36303 0.67 0.166948
Target:  5'- uUGUUGCGCgCGUAGuuGCUACCGUCg -3'
miRNA:   3'- cGCGGUGCGgGCGUCgcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 9673 0.67 0.166948
Target:  5'- uCGCCGaGCCgGCcgaGGCGGUCACCuuGCUc -3'
miRNA:   3'- cGCGGUgCGGgCG---UCGCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 3971 0.67 0.166512
Target:  5'- aGCGcCCAgGCUucguugggggucaUGUGGCGGCgGCgGCCg -3'
miRNA:   3'- -CGC-GGUgCGG-------------GCGUCGCCGgUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.