miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 23478 0.67 0.16263
Target:  5'- -aGCCG-GCCCGCuGCucGGCCgGCUGCUc -3'
miRNA:   3'- cgCGGUgCGGGCGuCG--CCGG-UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5633 0.67 0.16263
Target:  5'- uCGCCGCGCuugaauCCGCGGaucGCCucgacguaGCCGCCc -3'
miRNA:   3'- cGCGGUGCG------GGCGUCgc-CGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 22146 0.67 0.16263
Target:  5'- gGCGCCgaaGCCCGC-GCuGCUGCCGg- -3'
miRNA:   3'- -CGCGGug-CGGGCGuCGcCGGUGGCgg -5'
23050 3' -65.2 NC_005178.1 + 23513 0.67 0.16263
Target:  5'- cGCGCCggGCGCCC----UGGCCGUCGCCc -3'
miRNA:   3'- -CGCGG--UGCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31049 0.67 0.16263
Target:  5'- cGCuGUCugGCCa--GGCGucGCCGCCGCUg -3'
miRNA:   3'- -CG-CGGugCGGgcgUCGC--CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28290 0.67 0.158413
Target:  5'- aGCgGCCugGauaGCGGCGGC-GCCGCUc -3'
miRNA:   3'- -CG-CGGugCgggCGUCGCCGgUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25458 0.67 0.158413
Target:  5'- aGCGCUggacGCGCUgGCGGaaaguucggauCGGaugaaCACCGCCa -3'
miRNA:   3'- -CGCGG----UGCGGgCGUC-----------GCCg----GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 33055 0.67 0.158413
Target:  5'- cGUGCCGCuCgaUGUAGCGGCUAUCGUa -3'
miRNA:   3'- -CGCGGUGcGg-GCGUCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 33274 0.67 0.157997
Target:  5'- gGCGCCGaagCCGCAGaaGCCcaagccgACCGCCu -3'
miRNA:   3'- -CGCGGUgcgGGCGUCgcCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 27114 0.67 0.157167
Target:  5'- gGCgGCUaacccgaacgacgaACGCCUGCGGcCGGaaaauaUCGCCGCCg -3'
miRNA:   3'- -CG-CGG--------------UGCGGGCGUC-GCC------GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 21091 0.68 0.154295
Target:  5'- gGCGCCAagguCGUCCGU-GUGcGCCGCCugaacGCCu -3'
miRNA:   3'- -CGCGGU----GCGGGCGuCGC-CGGUGG-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 18563 0.68 0.154295
Target:  5'- cGCGCCGCGCCC-Cuuc-GCCGCuCGCg -3'
miRNA:   3'- -CGCGGUGCGGGcGucgcCGGUG-GCGg -5'
23050 3' -65.2 NC_005178.1 + 34880 0.68 0.154295
Target:  5'- gGCGCCACGCCgGUu---GUCGCCGgCa -3'
miRNA:   3'- -CGCGGUGCGGgCGucgcCGGUGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 21259 0.68 0.154295
Target:  5'- gGUGCC--GUCCGUGGCGGCgACgGUCu -3'
miRNA:   3'- -CGCGGugCGGGCGUCGCCGgUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 13811 0.68 0.154295
Target:  5'- uUGCC-CaGCuuGCGGgGGaguuCCGCCGCCa -3'
miRNA:   3'- cGCGGuG-CGggCGUCgCC----GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3566 0.68 0.154295
Target:  5'- uGCGCgACGag-GCGGuCGGCCuuauggGCCGCCu -3'
miRNA:   3'- -CGCGgUGCgggCGUC-GCCGG------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 34717 0.68 0.150274
Target:  5'- -gGCUACGggCGCGGCGGUCGaacaCGCCc -3'
miRNA:   3'- cgCGGUGCggGCGUCGCCGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 28592 0.68 0.150274
Target:  5'- cGCGCCaucccuaccACGCCCaaGCA-UGGgCGCCGCUc -3'
miRNA:   3'- -CGCGG---------UGCGGG--CGUcGCCgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5815 0.68 0.150274
Target:  5'- aCGCCGgauaccUGaCCCGCAaCGGCCGCCauuacGCCc -3'
miRNA:   3'- cGCGGU------GC-GGGCGUcGCCGGUGG-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 26296 0.68 0.150274
Target:  5'- cCGCCGggcaacUGUCCGCcauGGCGGCguCACuCGCCa -3'
miRNA:   3'- cGCGGU------GCGGGCG---UCGCCG--GUG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.