miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 2841 0.66 0.198607
Target:  5'- aCGCC-CuagaccugaugaugGCCCGCAcCGGCUACaGCCg -3'
miRNA:   3'- cGCGGuG--------------CGGGCGUcGCCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 12436 0.66 0.195069
Target:  5'- -aGCCAaggcCGCCgGUAGUGGCCuggGCgGCa -3'
miRNA:   3'- cgCGGU----GCGGgCGUCGCCGG---UGgCGg -5'
23050 3' -65.2 NC_005178.1 + 17112 0.66 0.195069
Target:  5'- -gGCCGCauggcgaagaugGCCCGCAGauCGGCCucgguuggcGuuGCCa -3'
miRNA:   3'- cgCGGUG------------CGGGCGUC--GCCGG---------UggCGG- -5'
23050 3' -65.2 NC_005178.1 + 31911 0.66 0.195069
Target:  5'- gGCGCU--GCCgGuCAuCGGCCAUCGCUg -3'
miRNA:   3'- -CGCGGugCGGgC-GUcGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 9359 0.66 0.195069
Target:  5'- aCGgCGCGCUCGCGGUGaGgaACCGCa -3'
miRNA:   3'- cGCgGUGCGGGCGUCGC-CggUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 29678 0.66 0.194568
Target:  5'- gGCGCCGucgaaauCGCCCagGUAGCGGCguCCcUCg -3'
miRNA:   3'- -CGCGGU-------GCGGG--CGUCGCCGguGGcGG- -5'
23050 3' -65.2 NC_005178.1 + 36153 0.66 0.19011
Target:  5'- -gGCCACGCCUGCuGGCcaGGUCAagaCGUa -3'
miRNA:   3'- cgCGGUGCGGGCG-UCG--CCGGUg--GCGg -5'
23050 3' -65.2 NC_005178.1 + 24589 0.66 0.19011
Target:  5'- gGCGaCCugGgCCGCuuCGGCCGCauuauucaGCUg -3'
miRNA:   3'- -CGC-GGugCgGGCGucGCCGGUGg-------CGG- -5'
23050 3' -65.2 NC_005178.1 + 15462 0.66 0.19011
Target:  5'- -aGUCGcCGCCCau-GCGGCCACCuaCg -3'
miRNA:   3'- cgCGGU-GCGGGcguCGCCGGUGGcgG- -5'
23050 3' -65.2 NC_005178.1 + 5904 0.66 0.19011
Target:  5'- aGCgGCCugGCUugagggCGUaauGGCGGCCGuuGCg -3'
miRNA:   3'- -CG-CGGugCGG------GCG---UCGCCGGUggCGg -5'
23050 3' -65.2 NC_005178.1 + 3682 0.66 0.189132
Target:  5'- cGCGCCGCcaaggaacuGCCCGgcuacauCGGC-GCCgacauggACCGCCa -3'
miRNA:   3'- -CGCGGUG---------CGGGC-------GUCGcCGG-------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 1772 0.66 0.188644
Target:  5'- aGUGCauCGCGgCCGUAagccacGCGGCCGCCacgcacaucgaccaGCCa -3'
miRNA:   3'- -CGCG--GUGCgGGCGU------CGCCGGUGG--------------CGG- -5'
23050 3' -65.2 NC_005178.1 + 19904 0.66 0.188158
Target:  5'- uGUGCCGgGCUgGCGGaucgaugccgccaGuGCCGCCGCa -3'
miRNA:   3'- -CGCGGUgCGGgCGUCg------------C-CGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 11835 0.67 0.185262
Target:  5'- -gGCCG-GCCUGCGGCGGaacccCCAUgGCUc -3'
miRNA:   3'- cgCGGUgCGGGCGUCGCC-----GGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 24249 0.67 0.185262
Target:  5'- gGCGCCccuCGaCCCGCAguauuacgcccuGCGaGCCGauggCGCCu -3'
miRNA:   3'- -CGCGGu--GC-GGGCGU------------CGC-CGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 17726 0.67 0.180524
Target:  5'- uUGuCUACGCCCGUcucGaCGGUCACCugGCCg -3'
miRNA:   3'- cGC-GGUGCGGGCGu--C-GCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 13763 0.67 0.180524
Target:  5'- gGUGCCuACGgCgGCaucaaGGCGGCCACUGaCa -3'
miRNA:   3'- -CGCGG-UGCgGgCG-----UCGCCGGUGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 26166 0.67 0.180524
Target:  5'- gGCGUugUugGCCgaCGCuGCGGCagcguCCGCCc -3'
miRNA:   3'- -CGCG--GugCGG--GCGuCGCCGgu---GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 22945 0.67 0.180524
Target:  5'- --uCCGCGUCCGCaucGGCgauagccugGGCCacgACCGCCg -3'
miRNA:   3'- cgcGGUGCGGGCG---UCG---------CCGG---UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 10927 0.67 0.180524
Target:  5'- gGCGUCcucgacguGCGCCCGaacaAGUGGCUGCCaGUUg -3'
miRNA:   3'- -CGCGG--------UGCGGGCg---UCGCCGGUGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.