miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23051 3' -63.1 NC_005178.1 + 25579 0.66 0.248752
Target:  5'- aCGGGCGCUUUccugccauccgcuggUGGCUGCCCgcgUGGCggUg -3'
miRNA:   3'- -GUCCGCGGGA---------------ACCGGUGGG---GCCGuuG- -5'
23051 3' -63.1 NC_005178.1 + 6134 0.66 0.246221
Target:  5'- gUAGGUGUCgaggggcGGCCACCCCucGGCAc- -3'
miRNA:   3'- -GUCCGCGGgaa----CCGGUGGGG--CCGUug -5'
23051 3' -63.1 NC_005178.1 + 26888 0.66 0.245591
Target:  5'- aCGGGCcgaagacaGCCCcgcUGGCCACagcgcguCCCGGCu-- -3'
miRNA:   3'- -GUCCG--------CGGGa--ACCGGUG-------GGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 9736 0.66 0.239986
Target:  5'- aAGGUGaccgCCUcGGCCGgCUCGGCGAa -3'
miRNA:   3'- gUCCGCg---GGAaCCGGUgGGGCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 2739 0.66 0.239986
Target:  5'- uGGGCGagg-UGGCCACCaaGGCGGu -3'
miRNA:   3'- gUCCGCgggaACCGGUGGggCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 31852 0.66 0.2357
Target:  5'- cCGGGUGCUgCUccagcacUGGCCGCCCCcuguaggucgucgccGGCAu- -3'
miRNA:   3'- -GUCCGCGG-GA-------ACCGGUGGGG---------------CCGUug -5'
23051 3' -63.1 NC_005178.1 + 18525 0.66 0.233883
Target:  5'- -cGGgGCUCaacugaGGCCAUCCCGGCc-- -3'
miRNA:   3'- guCCgCGGGaa----CCGGUGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 19889 0.66 0.233883
Target:  5'- uGGGCGCCCUauggaUGuGCCGggCUGGCGGa -3'
miRNA:   3'- gUCCGCGGGA-----AC-CGGUggGGCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 13028 0.66 0.233883
Target:  5'- aAGGUGCagCUgcUGGCCAgCCUGGcCGAUg -3'
miRNA:   3'- gUCCGCGg-GA--ACCGGUgGGGCC-GUUG- -5'
23051 3' -63.1 NC_005178.1 + 21805 0.66 0.227912
Target:  5'- -cGGUGCCCUUGuuGCuCACCgaGGCAu- -3'
miRNA:   3'- guCCGCGGGAAC--CG-GUGGggCCGUug -5'
23051 3' -63.1 NC_005178.1 + 4251 0.66 0.227912
Target:  5'- aAGcGCGCCC-UGGCuCACCUCGaCGAg -3'
miRNA:   3'- gUC-CGCGGGaACCG-GUGGGGCcGUUg -5'
23051 3' -63.1 NC_005178.1 + 20804 0.66 0.227912
Target:  5'- gAGGcCGCCCUcgcGGUUugCUCGGCcauGCa -3'
miRNA:   3'- gUCC-GCGGGAa--CCGGugGGGCCGu--UG- -5'
23051 3' -63.1 NC_005178.1 + 36065 0.66 0.222069
Target:  5'- aAGuGuCGCCCUcGGCCugGCCggaagUCGGCAGCg -3'
miRNA:   3'- gUC-C-GCGGGAaCCGG--UGG-----GGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 21014 0.66 0.222069
Target:  5'- -cGGCGaagaCCUggacguUGGCCGCUaCCGGCAc- -3'
miRNA:   3'- guCCGCg---GGA------ACCGGUGG-GGCCGUug -5'
23051 3' -63.1 NC_005178.1 + 8900 0.66 0.222069
Target:  5'- -uGGCGUCgg-GGCuCACaCCCGGCAcGCg -3'
miRNA:   3'- guCCGCGGgaaCCG-GUG-GGGCCGU-UG- -5'
23051 3' -63.1 NC_005178.1 + 12036 0.66 0.222069
Target:  5'- -uGGCGCCUc-GGCUugGCCCUGGCc-- -3'
miRNA:   3'- guCCGCGGGaaCCGG--UGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 31169 0.67 0.205305
Target:  5'- uGGGCGagccggaCCUgguccUGGUCAUCaCCGGCAAUc -3'
miRNA:   3'- gUCCGCg------GGA-----ACCGGUGG-GGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 5859 0.67 0.199965
Target:  5'- cCAGGCcgcuacaccgGCCCUcGGCCGCCCaucgucCAGCg -3'
miRNA:   3'- -GUCCG----------CGGGAaCCGGUGGGgcc---GUUG- -5'
23051 3' -63.1 NC_005178.1 + 20581 0.67 0.198386
Target:  5'- aCGGGCGCCCacuucgccgggucggGGUUACCgggggCGGCGACc -3'
miRNA:   3'- -GUCCGCGGGaa-------------CCGGUGGg----GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 6064 0.67 0.194746
Target:  5'- -cGGUGCCgaggggUGGCCGCCCCu-CGACa -3'
miRNA:   3'- guCCGCGGga----ACCGGUGGGGccGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.