miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23059 5' -53.7 NC_005178.1 + 25610 0.66 0.702219
Target:  5'- -aGCAacgagcGGCCgAGGCUGCGGcgaaaGCCa -3'
miRNA:   3'- caCGUau----CUGG-UCCGAUGCCuug--CGG- -5'
23059 5' -53.7 NC_005178.1 + 3190 0.66 0.702219
Target:  5'- -aGCcUGGACCAGGuCUAUGcGuuccuGCGCa -3'
miRNA:   3'- caCGuAUCUGGUCC-GAUGC-Cu----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 25303 0.66 0.702219
Target:  5'- gGUGC--GGACCAGGUcgaGGAACuGUCc -3'
miRNA:   3'- -CACGuaUCUGGUCCGaugCCUUG-CGG- -5'
23059 5' -53.7 NC_005178.1 + 35423 0.66 0.702219
Target:  5'- -aGCA---GCCGGGCc-UGGAGCGUCa -3'
miRNA:   3'- caCGUaucUGGUCCGauGCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 23622 0.66 0.702219
Target:  5'- cUGUAgcuGACUggcgaagccugcGGGCUGCGGGccagcggagugACGCCc -3'
miRNA:   3'- cACGUau-CUGG------------UCCGAUGCCU-----------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 6697 0.66 0.695448
Target:  5'- -cGCcUGGACCGGGCgGCcucacugcugagccaGGAggugccgccauGCGCCg -3'
miRNA:   3'- caCGuAUCUGGUCCGaUG---------------CCU-----------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 35501 0.66 0.690921
Target:  5'- -cGCGUAcccGGCgaAGGuCUACGGGGCGUUa -3'
miRNA:   3'- caCGUAU---CUGg-UCC-GAUGCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 8639 0.66 0.690921
Target:  5'- gGUGCAguugGGGCCGgcucGGcCUGCGGcAUGaCCa -3'
miRNA:   3'- -CACGUa---UCUGGU----CC-GAUGCCuUGC-GG- -5'
23059 5' -53.7 NC_005178.1 + 8121 0.66 0.690921
Target:  5'- -aGUucgguGACCAGGUgccCGaGGGCGCCa -3'
miRNA:   3'- caCGuau--CUGGUCCGau-GC-CUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 31188 0.66 0.690921
Target:  5'- cGUGCAUuGACCAcGG--GCGGGcCGUCg -3'
miRNA:   3'- -CACGUAuCUGGU-CCgaUGCCUuGCGG- -5'
23059 5' -53.7 NC_005178.1 + 20498 0.66 0.690921
Target:  5'- -cGCGUccuGGGCCAGGCcgaGGGuuucGCGCa -3'
miRNA:   3'- caCGUA---UCUGGUCCGaugCCU----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 32291 0.66 0.690921
Target:  5'- -gGCuc-GACCAGGCggcccaggGCGGcgucgAugGCCa -3'
miRNA:   3'- caCGuauCUGGUCCGa-------UGCC-----UugCGG- -5'
23059 5' -53.7 NC_005178.1 + 3119 0.66 0.687519
Target:  5'- -cGCucauGuCCGGGCgGCGGAccuucggcaccaggGCGCCa -3'
miRNA:   3'- caCGuau-CuGGUCCGaUGCCU--------------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 28293 0.66 0.679562
Target:  5'- -gGCAgcGGCCuGGauaGCGGcGGCGCCg -3'
miRNA:   3'- caCGUauCUGGuCCga-UGCC-UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 11991 0.66 0.672722
Target:  5'- gGUGCGggcUGGuACCGGGCUGCugccgaGGucuuccgaaugaccuGGCGCCu -3'
miRNA:   3'- -CACGU---AUC-UGGUCCGAUG------CC---------------UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 18204 0.66 0.668154
Target:  5'- -gGCGUcuauGGGCCGGGCcaaAUGGAGaacaucaGCCa -3'
miRNA:   3'- caCGUA----UCUGGUCCGa--UGCCUUg------CGG- -5'
23059 5' -53.7 NC_005178.1 + 16787 0.66 0.668154
Target:  5'- -aGCGcUGGACCAGGUgcUGGccaGCCu -3'
miRNA:   3'- caCGU-AUCUGGUCCGauGCCuugCGG- -5'
23059 5' -53.7 NC_005178.1 + 14442 0.66 0.656708
Target:  5'- cUGCu----CCGGGCUGCGGAcguucuCGUCg -3'
miRNA:   3'- cACGuaucuGGUCCGAUGCCUu-----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 22067 0.67 0.645238
Target:  5'- -aGCAggaACCAGGCgguguCGGAcucgauACGCCc -3'
miRNA:   3'- caCGUaucUGGUCCGau---GCCU------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 11009 0.67 0.645238
Target:  5'- -cGCGgGGGgCAGGagGCGGGccGCGCCg -3'
miRNA:   3'- caCGUaUCUgGUCCgaUGCCU--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.