Results 21 - 40 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 30286 | 0.67 | 0.633755 |
Target: 5'- gGUGCGacGACCAGuuGCU-UGuGAGCGCCu -3' miRNA: 3'- -CACGUauCUGGUC--CGAuGC-CUUGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 11009 | 0.67 | 0.645238 |
Target: 5'- -cGCGgGGGgCAGGagGCGGGccGCGCCg -3' miRNA: 3'- caCGUaUCUgGUCCgaUGCCU--UGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 13188 | 0.67 | 0.633755 |
Target: 5'- -aGCu--GGCCAGGCgcUGGAGCaCCu -3' miRNA: 3'- caCGuauCUGGUCCGauGCCUUGcGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 20034 | 0.67 | 0.610795 |
Target: 5'- gGUGCucGUAGuCCAGGacggGCGGAgucuuGCGCg -3' miRNA: 3'- -CACG--UAUCuGGUCCga--UGCCU-----UGCGg -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 8639 | 0.66 | 0.690921 |
Target: 5'- gGUGCAguugGGGCCGgcucGGcCUGCGGcAUGaCCa -3' miRNA: 3'- -CACGUa---UCUGGU----CC-GAUGCCuUGC-GG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 22067 | 0.67 | 0.645238 |
Target: 5'- -aGCAggaACCAGGCgguguCGGAcucgauACGCCc -3' miRNA: 3'- caCGUaucUGGUCCGau---GCCU------UGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 18735 | 0.68 | 0.576531 |
Target: 5'- -----aGGACCGGGaggUACGGGcGCGCCg -3' miRNA: 3'- cacguaUCUGGUCCg--AUGCCU-UGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 20498 | 0.66 | 0.690921 |
Target: 5'- -cGCGUccuGGGCCAGGCcgaGGGuuucGCGCa -3' miRNA: 3'- caCGUA---UCUGGUCCGaugCCU----UGCGg -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 10575 | 0.68 | 0.576531 |
Target: 5'- -cGCu--GAgCAGGCUACGGGcgguuUGCCc -3' miRNA: 3'- caCGuauCUgGUCCGAUGCCUu----GCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 3119 | 0.66 | 0.687519 |
Target: 5'- -cGCucauGuCCGGGCgGCGGAccuucggcaccaggGCGCCa -3' miRNA: 3'- caCGuau-CuGGUCCGaUGCCU--------------UGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 35423 | 0.66 | 0.702219 |
Target: 5'- -aGCA---GCCGGGCc-UGGAGCGUCa -3' miRNA: 3'- caCGUaucUGGUCCGauGCCUUGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 5219 | 0.67 | 0.633755 |
Target: 5'- -gGCuGUAGaccggcGCCAGGUUGCGG-GCGUCc -3' miRNA: 3'- caCG-UAUC------UGGUCCGAUGCCuUGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 16588 | 0.67 | 0.62227 |
Target: 5'- -gGuCGaAGACCAGGCgg-GGGGCGCg -3' miRNA: 3'- caC-GUaUCUGGUCCGaugCCUUGCGg -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 21285 | 0.67 | 0.610795 |
Target: 5'- aUGCGgccGGCCGGGgaGCGGGuuucggUGCCg -3' miRNA: 3'- cACGUau-CUGGUCCgaUGCCUu-----GCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 25982 | 0.68 | 0.531581 |
Target: 5'- -gGCAUcccgcuGGCCAGGCUGgugaccacguCGGugaucuGCGCCg -3' miRNA: 3'- caCGUAu-----CUGGUCCGAU----------GCCu-----UGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 19899 | 0.71 | 0.406317 |
Target: 5'- aUGgAUGuGCCGGGCUgGCGGAucgAUGCCg -3' miRNA: 3'- cACgUAUcUGGUCCGA-UGCCU---UGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 3190 | 0.66 | 0.702219 |
Target: 5'- -aGCcUGGACCAGGuCUAUGcGuuccuGCGCa -3' miRNA: 3'- caCGuAUCUGGUCC-GAUGC-Cu----UGCGg -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 1886 | 0.67 | 0.59934 |
Target: 5'- -gGCccUGGugCAGGCUGaGGAGuauCGCCa -3' miRNA: 3'- caCGu-AUCugGUCCGAUgCCUU---GCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 34172 | 0.67 | 0.587915 |
Target: 5'- -cGCGaaUGGACgAGGCgagcugGCGGGcCGCUg -3' miRNA: 3'- caCGU--AUCUGgUCCGa-----UGCCUuGCGG- -5' |
|||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 34834 | 0.67 | 0.586775 |
Target: 5'- -gGCGUGGcgccgccaccACCGGGCUGgauuccgcccgacCGG-ACGCCu -3' miRNA: 3'- caCGUAUC----------UGGUCCGAU-------------GCCuUGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home