miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23064 3' -52.5 NC_005178.1 + 21892 0.66 0.79211
Target:  5'- --gUCGGcCCGGCGCUGGaagacguggCGAAGAUGc -3'
miRNA:   3'- agaAGCU-GGUCGUGACUg--------GCUUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 16542 0.66 0.79211
Target:  5'- gUCUUCGACCucaAGgACcgGGCCGAccuGGCc -3'
miRNA:   3'- -AGAAGCUGG---UCgUGa-CUGGCUu--CUGc -5'
23064 3' -52.5 NC_005178.1 + 12902 0.66 0.771404
Target:  5'- --aUCGGCgCAGuUGCUGGCCGGuGGugGg -3'
miRNA:   3'- agaAGCUG-GUC-GUGACUGGCU-UCugC- -5'
23064 3' -52.5 NC_005178.1 + 15653 0.66 0.771404
Target:  5'- aUCUUCGccacgucuuCCAGCGCcgGGCCGAccaGGAg- -3'
miRNA:   3'- -AGAAGCu--------GGUCGUGa-CUGGCU---UCUgc -5'
23064 3' -52.5 NC_005178.1 + 17877 0.66 0.76081
Target:  5'- aUCUUCuGGCCaAGCcCUGGCaCGcGGAUGg -3'
miRNA:   3'- -AGAAG-CUGG-UCGuGACUG-GCuUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 22199 0.66 0.76081
Target:  5'- --cUCcACCGGCACUGGCgcauaaGggGGCa -3'
miRNA:   3'- agaAGcUGGUCGUGACUGg-----CuuCUGc -5'
23064 3' -52.5 NC_005178.1 + 9654 0.66 0.76081
Target:  5'- aUCUgcgCGGCCGGUggcuucgccgaGCcGGCCG-AGGCGg -3'
miRNA:   3'- -AGAa--GCUGGUCG-----------UGaCUGGCuUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 12655 0.66 0.76081
Target:  5'- cUCggCGGCCGGCgcGCUGGCgGguGGCc -3'
miRNA:   3'- -AGaaGCUGGUCG--UGACUGgCuuCUGc -5'
23064 3' -52.5 NC_005178.1 + 35676 0.66 0.746826
Target:  5'- --cUCacauCCAGCaguugguccuauccGCUGGCCGAGGACa -3'
miRNA:   3'- agaAGcu--GGUCG--------------UGACUGGCUUCUGc -5'
23064 3' -52.5 NC_005178.1 + 26448 0.67 0.739205
Target:  5'- aUUUUCagcaGCgCGGCGCUGccgGCCGAGGugGa -3'
miRNA:   3'- -AGAAGc---UG-GUCGUGAC---UGGCUUCugC- -5'
23064 3' -52.5 NC_005178.1 + 10354 0.67 0.728221
Target:  5'- ---cCGGgCuGCGCUGGCCGAgcuGGugGg -3'
miRNA:   3'- agaaGCUgGuCGUGACUGGCU---UCugC- -5'
23064 3' -52.5 NC_005178.1 + 17041 0.67 0.717133
Target:  5'- aCUUCG-CCGGguCgggGuuACCGggGGCGg -3'
miRNA:   3'- aGAAGCuGGUCguGa--C--UGGCuuCUGC- -5'
23064 3' -52.5 NC_005178.1 + 12100 0.67 0.717133
Target:  5'- gUCgcgUGGCgGGC-CUGGCCGAuGGGCGc -3'
miRNA:   3'- -AGaa-GCUGgUCGuGACUGGCU-UCUGC- -5'
23064 3' -52.5 NC_005178.1 + 28187 0.67 0.694695
Target:  5'- --cUCGGCCGGCGCccuggcGACUGcuGGCGg -3'
miRNA:   3'- agaAGCUGGUCGUGa-----CUGGCuuCUGC- -5'
23064 3' -52.5 NC_005178.1 + 17654 0.67 0.694695
Target:  5'- ----aGACCGGCcaGgUGACCGucGAGACGg -3'
miRNA:   3'- agaagCUGGUCG--UgACUGGC--UUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 24654 0.67 0.694695
Target:  5'- ---cCGGCCAGCaACUGcGCCGAuuGCGc -3'
miRNA:   3'- agaaGCUGGUCG-UGAC-UGGCUucUGC- -5'
23064 3' -52.5 NC_005178.1 + 35049 0.67 0.694695
Target:  5'- gCgggCGAUCAGgGCguuACCGAGGGCGa -3'
miRNA:   3'- aGaa-GCUGGUCgUGac-UGGCUUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 35283 0.68 0.671994
Target:  5'- ---cCGGCCaAGCAuCUGGCCGggGcuCGg -3'
miRNA:   3'- agaaGCUGG-UCGU-GACUGGCuuCu-GC- -5'
23064 3' -52.5 NC_005178.1 + 31921 0.68 0.660576
Target:  5'- gUCaUCGGCCAuCGCUGAUCGGcauGGGCc -3'
miRNA:   3'- -AGaAGCUGGUcGUGACUGGCU---UCUGc -5'
23064 3' -52.5 NC_005178.1 + 10963 0.68 0.637666
Target:  5'- ---gCGGCCccAGCgaaucccuuGCUGAUCGAGGGCGg -3'
miRNA:   3'- agaaGCUGG--UCG---------UGACUGGCUUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.