miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23072 5' -57.3 NC_005178.1 + 27225 0.67 0.468416
Target:  5'- gCUUCGccccUCCGCGcCCGGCCCu- -3'
miRNA:   3'- aGAAGCuacaAGGCGUcGGCCGGGcg -5'
23072 5' -57.3 NC_005178.1 + 28319 0.69 0.322615
Target:  5'- aUCUUCGAUGcUUCggagucgugcaGCGGCgGGCCUuGCa -3'
miRNA:   3'- -AGAAGCUAC-AAGg----------CGUCGgCCGGG-CG- -5'
23072 5' -57.3 NC_005178.1 + 31961 0.7 0.291878
Target:  5'- --gUCGgcGUUCCGUAGCCuGGUCUauGCa -3'
miRNA:   3'- agaAGCuaCAAGGCGUCGG-CCGGG--CG- -5'
23072 5' -57.3 NC_005178.1 + 32090 0.67 0.41913
Target:  5'- ---aCGGUGaacucUUCGCGGuuGGCCCGg -3'
miRNA:   3'- agaaGCUACa----AGGCGUCggCCGGGCg -5'
23072 5' -57.3 NC_005178.1 + 33914 0.69 0.347212
Target:  5'- gCggCGAUGcUCgGCGGCCGGUgCCGg -3'
miRNA:   3'- aGaaGCUACaAGgCGUCGGCCG-GGCg -5'
23072 5' -57.3 NC_005178.1 + 34146 0.67 0.41913
Target:  5'- ---cCGGgacUUCCGgGGaCUGGCCCGCa -3'
miRNA:   3'- agaaGCUac-AAGGCgUC-GGCCGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 35773 0.66 0.52051
Target:  5'- --cUUGA-GUUCaCGUgccuGCCGGCUCGCu -3'
miRNA:   3'- agaAGCUaCAAG-GCGu---CGGCCGGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.