miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23074 5' -50.4 NC_005178.1 + 30392 0.66 0.866591
Target:  5'- aGGCGCGGC---ACGCUuuccagcagcGCAUCGCg -3'
miRNA:   3'- -UCGUGUCGaacUGCGAua--------UGUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 31902 0.66 0.866591
Target:  5'- cGC-CGGgaUGGCGCUGccgguCAUCgGCCa -3'
miRNA:   3'- uCGuGUCgaACUGCGAUau---GUAG-CGG- -5'
23074 5' -50.4 NC_005178.1 + 22803 0.66 0.866591
Target:  5'- cAGUACGGCgaGGCGUc---CAUcCGCCa -3'
miRNA:   3'- -UCGUGUCGaaCUGCGauauGUA-GCGG- -5'
23074 5' -50.4 NC_005178.1 + 17914 0.66 0.866591
Target:  5'- uGGCAgGcGUUUGuggacCGCUccACGUCGCCc -3'
miRNA:   3'- -UCGUgU-CGAACu----GCGAuaUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 32225 0.66 0.857832
Target:  5'- uGUACAGCUccagguucaGGCGCUGgAgGUCgGCCa -3'
miRNA:   3'- uCGUGUCGAa--------CUGCGAUaUgUAG-CGG- -5'
23074 5' -50.4 NC_005178.1 + 26063 0.66 0.857832
Target:  5'- cGC-CAGCgacGGC-CUGgacgACAUCGCCc -3'
miRNA:   3'- uCGuGUCGaa-CUGcGAUa---UGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 32821 0.66 0.857832
Target:  5'- uGCACGGCagucgUUGGCGac---CAUCGCUg -3'
miRNA:   3'- uCGUGUCG-----AACUGCgauauGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 31538 0.66 0.856941
Target:  5'- uGCGCGGCgagGACGCcuucaccUAUGaaGUCGUCg -3'
miRNA:   3'- uCGUGUCGaa-CUGCG-------AUAUg-UAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 31372 0.66 0.848801
Target:  5'- gAGCgGCAGCUacuggacaUGACGCUGUuugGCuggggCGCg -3'
miRNA:   3'- -UCG-UGUCGA--------ACUGCGAUA---UGua---GCGg -5'
23074 5' -50.4 NC_005178.1 + 34452 0.66 0.848801
Target:  5'- gAGC-CAGCUUauCGUgaaAUACAUCGaCCa -3'
miRNA:   3'- -UCGuGUCGAAcuGCGa--UAUGUAGC-GG- -5'
23074 5' -50.4 NC_005178.1 + 1914 0.66 0.843256
Target:  5'- cGCuuCAGCgucgUGcCGCUGUAgaccuggagcgucacCGUCGCCc -3'
miRNA:   3'- uCGu-GUCGa---ACuGCGAUAU---------------GUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 33699 0.66 0.839509
Target:  5'- uGCGCGGCaaGcUGCUGUGCG--GCCg -3'
miRNA:   3'- uCGUGUCGaaCuGCGAUAUGUagCGG- -5'
23074 5' -50.4 NC_005178.1 + 2301 0.66 0.839509
Target:  5'- cGGCGCAGCcgcGCGCgagggugACcgUGCCg -3'
miRNA:   3'- -UCGUGUCGaacUGCGaua----UGuaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 3857 0.66 0.829966
Target:  5'- cGCacaGCAGCUUGcCGC---GCAUCGUUg -3'
miRNA:   3'- uCG---UGUCGAACuGCGauaUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 30904 0.66 0.828999
Target:  5'- uGCAgCGGUUUGACGCUcaaggugAUugAUaGCCc -3'
miRNA:   3'- uCGU-GUCGAACUGCGA-------UAugUAgCGG- -5'
23074 5' -50.4 NC_005178.1 + 35822 0.67 0.820184
Target:  5'- cGGCcCAGUUcGGCGagcaGUGCAUCGCg -3'
miRNA:   3'- -UCGuGUCGAaCUGCga--UAUGUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 6132 0.67 0.820184
Target:  5'- uGCACAGCaaGGCGgUAg----CGCCg -3'
miRNA:   3'- uCGUGUCGaaCUGCgAUauguaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 13097 0.67 0.810175
Target:  5'- uGUACAGCUcGACGaugaccgGCG-CGCCg -3'
miRNA:   3'- uCGUGUCGAaCUGCgaua---UGUaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 34338 0.67 0.810175
Target:  5'- cAGCAucCGGCUccugcggGACGaCUAUaACGUCGCa -3'
miRNA:   3'- -UCGU--GUCGAa------CUGC-GAUA-UGUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 30034 0.67 0.804066
Target:  5'- uAGCGCAGCUcaGcgccgggccauucacGCGCUAUcACcuguUCGCCa -3'
miRNA:   3'- -UCGUGUCGAa-C---------------UGCGAUA-UGu---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.