miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23079 3' -54.3 NC_005178.1 + 3956 0.66 0.689098
Target:  5'- ---aGCgCGAGcGCGuCG-CCGGUCGCg -3'
miRNA:   3'- cuaaCG-GCUCaUGUuGCuGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 5757 0.66 0.689098
Target:  5'- ---cGuCCGGGUGCuGCuccagcACUGGCCGCc -3'
miRNA:   3'- cuaaC-GGCUCAUGuUGc-----UGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 32632 0.66 0.689098
Target:  5'- cGGUcGCCGAgcgGUGCcguCGACCuGGUCGUc -3'
miRNA:   3'- -CUAaCGGCU---CAUGuu-GCUGG-CCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 33390 0.66 0.689098
Target:  5'- uGUUGCCGuucagcucugcGGUGCAgaggaaGCGGCCcucGCCGUc -3'
miRNA:   3'- cUAACGGC-----------UCAUGU------UGCUGGc--CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 34180 0.66 0.689098
Target:  5'- ---gGCCGG----AAgGGCCGGCCGUg -3'
miRNA:   3'- cuaaCGGCUcaugUUgCUGGCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 31695 0.66 0.677868
Target:  5'- cGAggGCCG-GUGUAGCGGCCuGGCUugaggGCg -3'
miRNA:   3'- -CUaaCGGCuCAUGUUGCUGG-CCGG-----CG- -5'
23079 3' -54.3 NC_005178.1 + 34144 0.66 0.677868
Target:  5'- ---gGCCGGGacuucCGGgGACUGGcCCGCa -3'
miRNA:   3'- cuaaCGGCUCau---GUUgCUGGCC-GGCG- -5'
23079 3' -54.3 NC_005178.1 + 16191 0.66 0.666592
Target:  5'- --cUGCUGcGaGCggUGACCGGCCu- -3'
miRNA:   3'- cuaACGGCuCaUGuuGCUGGCCGGcg -5'
23079 3' -54.3 NC_005178.1 + 26954 0.66 0.666592
Target:  5'- gGAUUGCUGcGGUGCcggcucgcuCGGCCGGuuGa -3'
miRNA:   3'- -CUAACGGC-UCAUGuu-------GCUGGCCggCg -5'
23079 3' -54.3 NC_005178.1 + 10324 0.66 0.666592
Target:  5'- cGAggGCCGGGcGCGgaggggcgaaGCGcGCCGgGCUGCg -3'
miRNA:   3'- -CUaaCGGCUCaUGU----------UGC-UGGC-CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 23439 0.66 0.655282
Target:  5'- ---cGCCGAcgcccaggGCGACGGCCaGGgCGCc -3'
miRNA:   3'- cuaaCGGCUca------UGUUGCUGG-CCgGCG- -5'
23079 3' -54.3 NC_005178.1 + 24310 0.66 0.655282
Target:  5'- --cUGCUGGGUcugcCGACG-CCGGCCcCg -3'
miRNA:   3'- cuaACGGCUCAu---GUUGCuGGCCGGcG- -5'
23079 3' -54.3 NC_005178.1 + 28752 0.66 0.651884
Target:  5'- -cUUGCCGAccugGUGCGGCucagcgguugcaaaGACCG-CCGCc -3'
miRNA:   3'- cuAACGGCU----CAUGUUG--------------CUGGCcGGCG- -5'
23079 3' -54.3 NC_005178.1 + 26603 0.67 0.632604
Target:  5'- ---cGCgGGGgGCAGgaGGCgGGCCGCg -3'
miRNA:   3'- cuaaCGgCUCaUGUUg-CUGgCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 2307 0.67 0.632604
Target:  5'- ---aGCCGcGcGCGAgggUGACCGuGCCGCu -3'
miRNA:   3'- cuaaCGGCuCaUGUU---GCUGGC-CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 20091 0.67 0.621259
Target:  5'- --gUGUCGAaUACAcCGcCCGcGCCGCg -3'
miRNA:   3'- cuaACGGCUcAUGUuGCuGGC-CGGCG- -5'
23079 3' -54.3 NC_005178.1 + 31933 0.67 0.609924
Target:  5'- ---cGCUGAucgGCAugGGCCGaGCCGa -3'
miRNA:   3'- cuaaCGGCUca-UGUugCUGGC-CGGCg -5'
23079 3' -54.3 NC_005178.1 + 33524 0.67 0.609924
Target:  5'- cGGUUGCCGAugaacuccaGUucGCAGCGGCggaCGGUgCGCa -3'
miRNA:   3'- -CUAACGGCU---------CA--UGUUGCUG---GCCG-GCG- -5'
23079 3' -54.3 NC_005178.1 + 32902 0.67 0.609924
Target:  5'- ---gGCUGGGUGaucucCAGCGGCgUGGUCGCc -3'
miRNA:   3'- cuaaCGGCUCAU-----GUUGCUG-GCCGGCG- -5'
23079 3' -54.3 NC_005178.1 + 23841 0.67 0.59861
Target:  5'- gGAUUGCUGGugccUACGGCGGCaucaaGGCgGCc -3'
miRNA:   3'- -CUAACGGCUc---AUGUUGCUGg----CCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.