miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 37187 0.68 0.533198
Target:  5'- cGCCUGGAGgcCGAguuugacGCC-AUC-GCUACCg -3'
miRNA:   3'- cCGGACCUC--GCU-------UGGcUAGuCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 36041 0.7 0.39182
Target:  5'- gGGCC-GGGGCGAACCaGAaCcGCUugGCCc -3'
miRNA:   3'- -CCGGaCCUCGCUUGG-CUaGuCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 35969 0.68 0.54525
Target:  5'- cGGUCguaaaGGGGCGggUCGcaacGCUGCCg -3'
miRNA:   3'- -CCGGa----CCUCGCuuGGCuaguCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 33908 0.71 0.347238
Target:  5'- cGCCUGGcGGCGAugC--UCGGCgGCCg -3'
miRNA:   3'- cCGGACC-UCGCUugGcuAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 33840 0.66 0.622377
Target:  5'- uGGCCUGGcgguccaugucGGCGccgauguAGCCGggCAGUU-CCu -3'
miRNA:   3'- -CCGGACC-----------UCGC-------UUGGCuaGUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 33144 0.66 0.668604
Target:  5'- cGGUCgGGuGCGGuucAUCGAUCcGCUcgGCCu -3'
miRNA:   3'- -CCGGaCCuCGCU---UGGCUAGuCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 33038 0.73 0.282987
Target:  5'- aGGCC-GGAGCGuuGCCGcUCGGCcagcucgcaccacUGCCg -3'
miRNA:   3'- -CCGGaCCUCGCu-UGGCuAGUCG-------------AUGG- -5'
23093 3' -54.8 NC_005178.1 + 32738 0.67 0.567378
Target:  5'- uGGCCUGGAcguaguaggcGCGGcGgCGAUUGGCgauCCa -3'
miRNA:   3'- -CCGGACCU----------CGCU-UgGCUAGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 32206 0.66 0.646082
Target:  5'- gGGCUcGGGGcCGcACCGGUguaCAGCU-CCa -3'
miRNA:   3'- -CCGGaCCUC-GCuUGGCUA---GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 31940 0.69 0.460147
Target:  5'- cGGCaUGGGcCGAGCCGAgcggUCGGCguuCCg -3'
miRNA:   3'- -CCGgACCUcGCUUGGCU----AGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 31710 0.68 0.509392
Target:  5'- cGGCCUGGcuugagggcguaauGGCGGccguuGCgGGUCAGgUAUCc -3'
miRNA:   3'- -CCGGACC--------------UCGCU-----UGgCUAGUCgAUGG- -5'
23093 3' -54.8 NC_005178.1 + 31652 0.66 0.634795
Target:  5'- -aCCcGGuGCGcACCGcgCAGCUgACCg -3'
miRNA:   3'- ccGGaCCuCGCuUGGCuaGUCGA-UGG- -5'
23093 3' -54.8 NC_005178.1 + 30253 0.66 0.623506
Target:  5'- uGCgCUGGAGC-AGCCGggCGGCg--- -3'
miRNA:   3'- cCG-GACCUCGcUUGGCuaGUCGaugg -5'
23093 3' -54.8 NC_005178.1 + 29963 0.67 0.589727
Target:  5'- cGGCCUGGcGUGGAaCGcgCAGCccgGCa -3'
miRNA:   3'- -CCGGACCuCGCUUgGCuaGUCGa--UGg -5'
23093 3' -54.8 NC_005178.1 + 28990 0.7 0.401173
Target:  5'- uGGCCUGG-GCGGcACCGAUagCAuCUACa -3'
miRNA:   3'- -CCGGACCuCGCU-UGGCUA--GUcGAUGg -5'
23093 3' -54.8 NC_005178.1 + 28432 0.68 0.531017
Target:  5'- cGGCCUGGcuauccaacaaugaGGuCGuaauCCGGUCGGCauccGCCa -3'
miRNA:   3'- -CCGGACC--------------UC-GCuu--GGCUAGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 28121 0.74 0.235992
Target:  5'- uGGCCUGG-GCGGuggcACCGAUggCGGCgcCCa -3'
miRNA:   3'- -CCGGACCuCGCU----UGGCUA--GUCGauGG- -5'
23093 3' -54.8 NC_005178.1 + 27989 0.67 0.578529
Target:  5'- cGGUCUGGAG-GAugCcGUC-GUUACCu -3'
miRNA:   3'- -CCGGACCUCgCUugGcUAGuCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 27742 0.66 0.646082
Target:  5'- cGCCUGGAccugGCGAGCCaGUaCGGUgacgGCUc -3'
miRNA:   3'- cCGGACCU----CGCUUGGcUA-GUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 26777 0.66 0.634795
Target:  5'- cGCCUGGAGC-AACUGAcCaaggGGCagGCCu -3'
miRNA:   3'- cCGGACCUCGcUUGGCUaG----UCGa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.